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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33314 (1 seq.)
>ENV09001866
ACQI01017883
Hydrothermal vent metagenome LCHCB.C1
344
254
-
Ser
TGA
[ENA]
¡û
Identical group No.91313 (10 seq.)
>WENV180287296
OBIK01011511
[OBIK] hydrothermal vent metagenome; sea water
173
86
-
Ser
TGA
[ENA]
¢þ
>WENV180581903
OCML01021868
[OCML] metagenome; diffuse fluid
177
264
+
Ser
TGA
[ENA]
¢þ
>WENV181207652
OFAZ01009924
[OFAZ] metagenome; hydrothermal vent
562
475
-
Ser
TGA
[ENA]
¢þ
>WENV181208000
OFBA01006435
[OFBA] metagenome; hydrothermal vent
229
142
-
Ser
TGA
[ENA]
¢þ
>WENV181224025
OFDD01010073
[OFDD] metagenome; hydrothermal vent
213
126
-
Ser
TGA
[ENA]
¢þ
>WENV170635317
JDSF01001763
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
1397
1484
+
Ser
TGA
[ENA]
¢þ
>WENV170692939
LGOV01049428
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
10552
10465
-
Ser
TGA
[ENA]
¢þ
>WENV170699723
LGVF01636666
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
155
242
+
Ser
TGA
[ENA]
¢þ
>W141451864
JFBL01000005
Campylobacterota
Sulfurospirillum arcachonense DSM 9755 [JFBL]
65276
65189
-
Ser
TGA
[ENA]
¡û
>ENV09001673
ACQI01001666
Hydrothermal vent metagenome LCHCB.C1
399
312
-
Ser
TGA
[ENA]
¡û
Identical group No.91318 (1 seq.)
>ENV09001843
ACQI01015255
Hydrothermal vent metagenome LCHCB.C1
313
227
-
Ser
TGA
[ENA]
¡û
Identical group No.187346 (1 seq.)
>ENV09001826
ACQI01011901
Hydrothermal vent metagenome LCHCB.C1
28
111
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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