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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic characterization of a wastewater treatment plant (SRP000180)
Anticodon = GCA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.321002 (1 seq.)
>SRA1001786
SRR001308.52523
Metagenomic characterization of a wastewater treatment plant (SRP000180)
181
105
-
Cys
GCA
[SRA]
Identical group No.685923 (1 seq.)
>SRA1001830
SRR001308.77611
Metagenomic characterization of a wastewater treatment plant (SRP000180)
244
170
-
Cys
GCA
[SRA]
Identical group No.780280 (140 seq.)
>W131003010
AGZU01000009
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
80468
80395
-
Cys
GCA
[ENA]
¡û
>W1710870840
LMKV01000012
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
299818
299745
-
Cys
GCA
[ENA]
¡û
>W1710894124
LNFK01000076
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
57670
57597
-
Cys
GCA
[ENA]
¡û
>W1710927026
LOEX01000093
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
14529
14602
+
Cys
GCA
[ENA]
¡û
>W131052375
AMYX01000021
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
5644
5571
-
Cys
GCA
[ENA]
¡û
>W1711072115
LSHH01000072
Alphaproteobacteria
Blastomonas sp. CCH3-A3 [LSHH]
38044
37971
-
Cys
GCA
[ENA]
¡û
>W1711072179
LSHI01000094
Alphaproteobacteria
Blastomonas sp. CCH9-F3 [LSHI]
206421
206348
-
Cys
GCA
[ENA]
¡û
>W1711072213
LSHJ01000114
Alphaproteobacteria
Blastomonas sp. CCH6-A6 [LSHJ]
20776
20849
+
Cys
GCA
[ENA]
¡û
>W1711072245
LSHK01000040
Alphaproteobacteria
Blastomonas sp. CCH8-E1 [LSHK]
10152
10225
+
Cys
GCA
[ENA]
¡û
>W1711072295
LSHL01000176
Alphaproteobacteria
Blastomonas sp. CCH10-E1 [LSHL]
10110
10183
+
Cys
GCA
[ENA]
¡û
>W1711072320
LSHM01000025
Alphaproteobacteria
Blastomonas sp. CCH9-A1 [LSHM]
20781
20854
+
Cys
GCA
[ENA]
¡û
>W1711072371
LSHN01000062
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
53298
53225
-
Cys
GCA
[ENA]
¡û
>W1711072418
LSHO01000069
Alphaproteobacteria
Blastomonas sp. CCH2-E1 [LSHO]
10121
10194
+
Cys
GCA
[ENA]
¡û
>W1711072442
LSHP01000040
Betaproteobacteria
Acidovorax delafieldii [LSHP]
10152
10225
+
Cys
GCA
[ENA]
¡û
>W1711072536
LSHR01000049
Alphaproteobacteria
Blastomonas sp. CCH3-E3 [LSHR]
20781
20854
+
Cys
GCA
[ENA]
¡û
>W1711072595
LSHS01000182
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
10149
10222
+
Cys
GCA
[ENA]
¡û
>W1711072605
LSHT01000033
Alphaproteobacteria
Sphingomonas sp. CCH18-B1 [LSHT]
53296
53223
-
Cys
GCA
[ENA]
¡û
>W1711072668
LSHU01000065
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
10137
10210
+
Cys
GCA
[ENA]
¡û
>W1711072709
LSHV01000134
Alphaproteobacteria
Blastomonas sp. CCH15-G10 [LSHV]
145037
144964
-
Cys
GCA
[ENA]
¡û
>W1711072733
LSHW01003322
Alphaproteobacteria
Blastomonas sp. CCH13-A3 [LSHW]
362
435
+
Cys
GCA
[ENA]
¡û
>W1711072826
LSHY01000153
Alphaproteobacteria
Blastomonas sp. CCH5-E3 [LSHY]
12091
12018
-
Cys
GCA
[ENA]
¡û
>W1711072872
LSHZ01000115
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
10141
10214
+
Cys
GCA
[ENA]
¡û
>W1711073450
LSIO01000042
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
86891
86964
+
Cys
GCA
[ENA]
¡û
>W1711073491
LSIP01000118
Alphaproteobacteria
Erythrobacter donghaensis [LSIP]
1414
1341
-
Cys
GCA
[ENA]
¡û
>W1711073636
LSIS01000555
Alphaproteobacteria
Blastomonas sp. CCH1-A6 [LSIS]
4829
4756
-
Cys
GCA
[ENA]
¡û
>W1711074137
LSJG01000077
Alphaproteobacteria
Porphyrobacter sp. CCH7-A1 [LSJG]
52769
52696
-
Cys
GCA
[ENA]
¡û
>W1711075034
LSKB01000037
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
67283
67356
+
Cys
GCA
[ENA]
¡û
>W1711075428
LSKK01000061
Alphaproteobacteria
Blastomonas sp. CCH2-A2 [LSKK]
9744
9671
-
Cys
GCA
[ENA]
¡û
>W1711075835
LSKS01000629
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
142632
142559
-
Cys
GCA
[ENA]
¡û
>W1711082183
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
215813
215740
-
Cys
GCA
[ENA]
¡û
>W1711083856
LSVG01000020
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
72851
72924
+
Cys
GCA
[ENA]
¡û
>W1711146761
LVJD01000105
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
52600
52673
+
Cys
GCA
[ENA]
¡û
>W131196338
ASTG01000001
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
296926
296999
+
Cys
GCA
[ENA]
¡û
>W1711506419
MKWJ01000025
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
301420
301347
-
Cys
GCA
[ENA]
¡û
>W1711705019
MSQB01000002
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
243893
243966
+
Cys
GCA
[ENA]
¡û
>W1712049853
NFUR01000003
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
335457
335384
-
Cys
GCA
[ENA]
¡û
>C171056570
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
2231251
2231324
+
Cys
GCA
-
¡û
>WENV180100144
OAOK01000043
[OAOK] sediment metagenome; sediment
48298
48371
+
Cys
GCA
[ENA]
¢þ
>WENV180100407
OAON01000809
[OAON] sediment metagenome; sediment
3230
3157
-
Cys
GCA
[ENA]
¢þ
>WENV180355101
OBNG01006312
[OBNG] sediment metagenome; sediment
465
538
+
Cys
GCA
[ENA]
¢þ
>WENV180355258
OBNH01000099
[OBNH] sediment metagenome; sediment
40063
40136
+
Cys
GCA
[ENA]
¢þ
>WENV180355500
OBNI01000124
[OBNI] sediment metagenome; sediment
14589
14516
-
Cys
GCA
[ENA]
¢þ
>WENV180355788
OBNJ01000398
[OBNJ] sediment metagenome; sediment
8258
8331
+
Cys
GCA
[ENA]
¢þ
>WENV180356198
OBNK01001410
[OBNK] sediment metagenome; sediment
1215
1142
-
Cys
GCA
[ENA]
¢þ
>WENV180391002
OBPM01000874
[OBPM] marine metagenome; ENVO:00002010
725
652
-
Cys
GCA
[ENA]
¢þ
>WENV180593996
OCOY01009369
[OCOY] marine metagenome; ENVO:00002010
731
658
-
Cys
GCA
[ENA]
¢þ
>W141077934
ATHL01000011
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
57571
57644
+
Cys
GCA
[ENA]
¡û
>WENV181170438
OEIV010047180
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
499
426
-
Cys
GCA
[ENA]
¢þ
>WENV181226847
OFDN01000164
[OFDN] hot springs metagenome; Water
60695
60768
+
Cys
GCA
[ENA]
¢þ
>WENV181368413
OFQL01003646
[OFQL] freshwater metagenome; Freshwater Lake
290
217
-
Cys
GCA
[ENA]
¢þ
>WENV181370334
OFQS01004119
[OFQS] freshwater metagenome; Freshwater Lake
1204
1277
+
Cys
GCA
[ENA]
¢þ
>WENV181377866
OFRA01040055
[OFRA] wastewater metagenome; Lake Maggiore Verbania
485
558
+
Cys
GCA
[ENA]
¢þ
>WENV181385203
OFRI01048136
[OFRI] wastewater metagenome; Exp Tend VB 90WW
647
574
-
Cys
GCA
[ENA]
¢þ
>WENV181401301
OFSF01114778
[OFSF] wastewater metagenome; Exp Tend VB 100WW
132
205
+
Cys
GCA
[ENA]
¢þ
>W141193352
AYSC01000064
Alphaproteobacteria
Blastomonas sp. CACIA14H2 [AYSC]
7510
7583
+
Cys
GCA
[ENA]
¡û
>WENV183725910
PJQF01036722
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
504
577
+
Cys
GCA
[ENA]
¢þ
>WENV183726574
PJTO01000018
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
345165
345238
+
Cys
GCA
[ENA]
¢þ
>WENV183728145
PJTP01044769
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
138
211
+
Cys
GCA
[ENA]
¢þ
>WENV183729946
PJTR01000227
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
52533
52606
+
Cys
GCA
[ENA]
¢þ
>WENV183730588
PJTS01000160
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
8977
8904
-
Cys
GCA
[ENA]
¢þ
>WENV183732679
PJTX01006104
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
772
845
+
Cys
GCA
[ENA]
¢þ
>WENV183732960
PJTY01000008
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
17452
17379
-
Cys
GCA
[ENA]
¢þ
>WENV183733208
PJTY01000268
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
10456
10383
-
Cys
GCA
[ENA]
¢þ
>WENV183733450
PJTY01002207
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
5249
5322
+
Cys
GCA
[ENA]
¢þ
>WENV183733907
PJTZ01000001
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
1723959
1723886
-
Cys
GCA
[ENA]
¢þ
>WENV183734568
PJTZ01018356
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
271
344
+
Cys
GCA
[ENA]
¢þ
>WENV183737099
PJUD01000438
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
17452
17379
-
Cys
GCA
[ENA]
¢þ
>WENV183737804
PJUD01035162
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
267
194
-
Cys
GCA
[ENA]
¢þ
>WENV183737864
PJUD01041690
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
477
404
-
Cys
GCA
[ENA]
¢þ
>WENV183739262
PJUE01005037
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2163
2090
-
Cys
GCA
[ENA]
¢þ
>WENV183743558
PJUJ01006150
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
634
707
+
Cys
GCA
[ENA]
¢þ
>WENV183744361
PJUK01011887
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
587
660
+
Cys
GCA
[ENA]
¢þ
>WENV183744921
PJUL01000684
[PJUL] feces metagenome; Chicken feces enriched on filter paper
17897
17970
+
Cys
GCA
[ENA]
¢þ
>WENV170010623
APMI01022871
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
334
261
-
Cys
GCA
[ENA]
¢þ
>WENV170201767
CEPQ01050389
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
31072
30999
-
Cys
GCA
[ENA]
¢þ
>WENV170710876
LNFM01002900
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
57640
57567
-
Cys
GCA
[ENA]
¢þ
>WENV170712594
LNFM01015327
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6858
6931
+
Cys
GCA
[ENA]
¢þ
>W141452315
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
2056250
2056323
+
Cys
GCA
[ENA]
¡û
>WENV170770474
LXNH01106233
[LXNH] seawater metagenome; marine seawater
827
900
+
Cys
GCA
[ENA]
¢þ
>WENV170838667
MDSZ01172071
[MDSZ] marine metagenome; seawater
2298
2225
-
Cys
GCA
[ENA]
¢þ
>W141484948
JFYZ01000012
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
160113
160186
+
Cys
GCA
[ENA]
¡û
>C181047594
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
5005789
5005862
+
Cys
GCA
-
¡û
>C181089723
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
234906
234833
-
Cys
GCA
-
¡û
>W141520429
JGVR01000001
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
419522
419449
-
Cys
GCA
[ENA]
¡û
>C191063673
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
150238
150165
-
Cys
GCA
-
¡û
>C191103896
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4836781
4836708
-
Cys
GCA
-
¡û
>C191163718
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1787531
1787458
-
Cys
GCA
-
¡û
>W141779118
JONN01000001
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
500664
500591
-
Cys
GCA
[ENA]
¡û
>W141807761
JPOU01000043
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
73650
73723
+
Cys
GCA
[ENA]
¡û
>W1910651493
LYMM01000021
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
29862
29789
-
Cys
GCA
[ENA]
¡û
>W1910744249
MIAJ01000008
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 [MIAJ]
110524
110597
+
Cys
GCA
[ENA]
¡û
>W1911114815
NOIW01000023
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
52430
52503
+
Cys
GCA
[ENA]
¡û
>W1911688290
QLJK01000007
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
94894
94967
+
Cys
GCA
[ENA]
¡û
>W1911722443
QRAL01000018
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
74190
74263
+
Cys
GCA
[ENA]
¡û
>SRA1002221
SRR001308.311354
Metagenomic characterization of a wastewater treatment plant (SRP000180)
85
12
-
Cys
GCA
[SRA]
>W1810239609
PPSM01000014
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
278503
278430
-
Cys
GCA
[ENA]
¡û
>W1810577303
QEOD01000002
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
928172
928099
-
Cys
GCA
[ENA]
¡û
>W1810658686
QJJM01000009
Alphaproteobacteria
Blastomonas natatoria DSM 3183 [QJJM]
89592
89519
-
Cys
GCA
[ENA]
¡û
>W1810683154
QKVT01000001
Alphaproteobacteria
Blastomonas sp. UPD001 [QKVT]
2811460
2811387
-
Cys
GCA
[ENA]
¡û
>W1810725211
QOCK01000001
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
199663
199736
+
Cys
GCA
[ENA]
¡û
>W1810789426
QRGP01000002
Alphaproteobacteria
Sphingorhabdus pulchriflava GY_G [QRGP]
29231
29158
-
Cys
GCA
[ENA]
¡û
>W1510941349
JFFT01000023
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
14288
14215
-
Cys
GCA
[ENA]
¡û
>W11176454
AFXE01000135
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
24442
24369
-
Cys
GCA
[ENA]
¡û
>W121068959
AJVL01000056
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
9765
9692
-
Cys
GCA
[ENA]
¡û
>W121119252
ALVC01000399
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
14862
14935
+
Cys
GCA
[ENA]
¡û
>W1610614833
LGJH01000158
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
6072
5999
-
Cys
GCA
[ENA]
¡û
>W1610733186
LMKV01000012
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
299818
299745
-
Cys
GCA
[ENA]
¡û
>W1610754390
LNFK01000076
Alphaproteobacteria
Sphingomonadales bacterium Ga0077559 [LNFK]
57670
57597
-
Cys
GCA
[ENA]
¡û
>W1610784568
LOEX01000093
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
14529
14602
+
Cys
GCA
[ENA]
¡û
>W1610911375
LSHH01000072
Alphaproteobacteria
Blastomonas sp. CCH3-A3 [LSHH]
38044
37971
-
Cys
GCA
[ENA]
¡û
>W1610911439
LSHI01000094
Alphaproteobacteria
Blastomonas sp. CCH9-F3 [LSHI]
206421
206348
-
Cys
GCA
[ENA]
¡û
>W1610911473
LSHJ01000114
Alphaproteobacteria
Blastomonas sp. CCH6-A6 [LSHJ]
20776
20849
+
Cys
GCA
[ENA]
¡û
>W1610911505
LSHK01000040
Alphaproteobacteria
Blastomonas sp. CCH8-E1 [LSHK]
10152
10225
+
Cys
GCA
[ENA]
¡û
>W1610911555
LSHL01000176
Alphaproteobacteria
Blastomonas sp. CCH10-E1 [LSHL]
10110
10183
+
Cys
GCA
[ENA]
¡û
>W1610911580
LSHM01000025
Alphaproteobacteria
Blastomonas sp. CCH9-A1 [LSHM]
20781
20854
+
Cys
GCA
[ENA]
¡û
>W1610911631
LSHN01000062
Alphaproteobacteria
Blastomonas sp. CCH13-E1 [LSHN]
53298
53225
-
Cys
GCA
[ENA]
¡û
>W1610911678
LSHO01000069
Alphaproteobacteria
Blastomonas sp. CCH2-E1 [LSHO]
10121
10194
+
Cys
GCA
[ENA]
¡û
>W1610911702
LSHP01000040
Betaproteobacteria
Acidovorax delafieldii [LSHP]
10152
10225
+
Cys
GCA
[ENA]
¡û
>W1610911796
LSHR01000049
Alphaproteobacteria
Blastomonas sp. CCH3-E3 [LSHR]
20781
20854
+
Cys
GCA
[ENA]
¡û
>W1610911855
LSHS01000182
Alphaproteobacteria
Blastomonas sp. CCH8-A3 [LSHS]
10149
10222
+
Cys
GCA
[ENA]
¡û
>W1610911865
LSHT01000033
Alphaproteobacteria
Sphingomonas sp. CCH18-B1 [LSHT]
53296
53223
-
Cys
GCA
[ENA]
¡û
>W1610911928
LSHU01000065
Alphaproteobacteria
Blastomonas sp. CCH7-E1 [LSHU]
10137
10210
+
Cys
GCA
[ENA]
¡û
>W1610911969
LSHV01000134
Alphaproteobacteria
Blastomonas sp. CCH15-G10 [LSHV]
145037
144964
-
Cys
GCA
[ENA]
¡û
>W1610911993
LSHW01003322
Alphaproteobacteria
Blastomonas sp. CCH13-A3 [LSHW]
362
435
+
Cys
GCA
[ENA]
¡û
>W1610912086
LSHY01000153
Alphaproteobacteria
Blastomonas sp. CCH5-E3 [LSHY]
12091
12018
-
Cys
GCA
[ENA]
¡û
>W1610912132
LSHZ01000115
Alphaproteobacteria
Blastomonas sp. CCH4-D12 [LSHZ]
10141
10214
+
Cys
GCA
[ENA]
¡û
>W1610912755
LSIO01000042
Alphaproteobacteria
Blastomonas sp. CCH5-A3 [LSIO]
86891
86964
+
Cys
GCA
[ENA]
¡û
>W1610912796
LSIP01000118
Alphaproteobacteria
Erythrobacter donghaensis [LSIP]
1414
1341
-
Cys
GCA
[ENA]
¡û
>W1610912941
LSIS01000555
Alphaproteobacteria
Blastomonas sp. CCH1-A6 [LSIS]
4829
4756
-
Cys
GCA
[ENA]
¡û
>W1610913442
LSJG01000077
Alphaproteobacteria
Porphyrobacter sp. CCH7-A1 [LSJG]
52769
52696
-
Cys
GCA
[ENA]
¡û
>W1610914339
LSKB01000037
Alphaproteobacteria
Blastomonas sp. CCH11-A4 [LSKB]
67283
67356
+
Cys
GCA
[ENA]
¡û
>W1610914733
LSKK01000061
Alphaproteobacteria
Blastomonas sp. CCH2-A2 [LSKK]
9744
9671
-
Cys
GCA
[ENA]
¡û
>W1610915140
LSKS01000629
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
142632
142559
-
Cys
GCA
[ENA]
¡û
>W1610920968
LSTR01000026
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
215813
215740
-
Cys
GCA
[ENA]
¡û
>W1610922609
LSVG01000020
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
72851
72924
+
Cys
GCA
[ENA]
¡û
>W1611004977
LXQM01000012
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
95446
95519
+
Cys
GCA
[ENA]
¡û
>W1710542217
FNYZ01000005
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
49976
50049
+
Cys
GCA
[ENA]
¡û
>W1710551583
FOGE01000020
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
16422
16495
+
Cys
GCA
[ENA]
¡û
>W1710592172
FRCG01000008
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
259945
260018
+
Cys
GCA
[ENA]
¡û
>W1710736079
LGJH01000158
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
6072
5999
-
Cys
GCA
[ENA]
¡û
Identical group No.780579 (104 seq.)
>W1710861474
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
1031830
1031757
-
Cys
GCA
[ENA]
¡û
>W1710865365
LMGP01000017
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
228922
228995
+
Cys
GCA
[ENA]
¡û
>W1710866640
LMHQ01000003
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
38040
38113
+
Cys
GCA
[ENA]
¡û
>W1710868494
LMJC01000031
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
210909
210982
+
Cys
GCA
[ENA]
¡û
>W1710868693
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
346150
346223
+
Cys
GCA
[ENA]
¡û
>W1710872393
LMLY01000025
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
158265
158192
-
Cys
GCA
[ENA]
¡û
>W1710872450
LMLZ01000021
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
157779
157706
-
Cys
GCA
[ENA]
¡û
>W1710872613
LMMC01000024
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
243300
243227
-
Cys
GCA
[ENA]
¡û
>W1710875988
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352836
352763
-
Cys
GCA
[ENA]
¡û
>W1710877026
LMPT01000019
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
590703
590630
-
Cys
GCA
[ENA]
¡û
>W1711073159
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
2519
2446
-
Cys
GCA
[ENA]
¡û
>W1711073680
LSIU01000786
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
12153
12226
+
Cys
GCA
[ENA]
¡û
>W1711075831
LSKS01000561
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
105
178
+
Cys
GCA
[ENA]
¡û
>W1711125011
LUKZ01000019
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
57620
57693
+
Cys
GCA
[ENA]
¡û
>W131227119
AUEX01000010
Betaproteobacteria
Acidovorax sp. JHL-9 [AUEX]
24390
24317
-
Cys
GCA
[ENA]
¡û
>W1711384829
MEDK01000190
Betaproteobacteria
Acidovorax sp. SCN 65-108 [MEDK]
4412
4485
+
Cys
GCA
[ENA]
¡û
>W1711384890
MEDM01000225
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
4085
4012
-
Cys
GCA
[ENA]
¡û
>W1711394768
MERR01000014
Betaproteobacteria
Burkholderiales bacterium GWA2_64_37 [MERR]
230242
230315
+
Cys
GCA
[ENA]
¡û
>W1711409711
MGPB01000033
Betaproteobacteria
Curvibacter sp. GWA2_63_95 [MGPB]
29323
29250
-
Cys
GCA
[ENA]
¡û
>W1711503015
MKTF01000065
Betaproteobacteria
Burkholderiales bacterium 64-34 [MKTF]
107050
106977
-
Cys
GCA
[ENA]
¡û
>W1712096707
NIAZ01000010
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
77027
76954
-
Cys
GCA
[ENA]
¡û
>C171049718
CP016447
Betaproteobacteria
Acidovorax sp. RAC01 [CP016447]
64193
64120
-
Cys
GCA
-
¡û
>C171091686
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1703562
1703635
+
Cys
GCA
-
¡û
>C171118043
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
1464830
1464903
+
Cys
GCA
-
¡û
>C171118094
CP021361
Betaproteobacteria
Acidovorax carolinensis NA3 [CP021361]
1455666
1455739
+
Cys
GCA
-
¡û
>C171118171
CP021362
Betaproteobacteria
Acidovorax carolinensis P3 [CP021362]
2492556
2492483
-
Cys
GCA
-
¡û
>C171118197
CP021366
Betaproteobacteria
Acidovorax carolinensis P4 [CP021366]
1588150
1588223
+
Cys
GCA
-
¡û
>C171120944
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
2515205
2515132
-
Cys
GCA
-
¡û
>WENV180016766
FSVW01001355
[FSVW] metagenome; soil
4100
4027
-
Cys
GCA
[ENA]
¢þ
>WENV180031788
FTJS01069320
[FTJS] metagenome; soil
300
227
-
Cys
GCA
[ENA]
¢þ
>WENV180256918
OBEQ010864916
[OBEQ] groundwater metagenome; groundwater
163
236
+
Cys
GCA
[ENA]
¢þ
>WENV180283693
OBID01001693
[OBID] metagenome; sludge
1261
1188
-
Cys
GCA
[ENA]
¢þ
>WENV180283850
OBID01004396
[OBID] metagenome; sludge
2526
2453
-
Cys
GCA
[ENA]
¢þ
>WENV181170283
OEIV010035283
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
109
182
+
Cys
GCA
[ENA]
¢þ
>WENV181311763
OFJB01011260
[OFJB] sludge metagenome; sludge
328
255
-
Cys
GCA
[ENA]
¢þ
>WENV181311798
OFJB01013197
[OFJB] sludge metagenome; sludge
2112
2039
-
Cys
GCA
[ENA]
¢þ
>WENV181369218
OFQO01012010
[OFQO] freshwater metagenome; Freshwater Lake
339
266
-
Cys
GCA
[ENA]
¢þ
>WENV181385173
OFRI01043722
[OFRI] wastewater metagenome; Exp Tend VB 90WW
675
748
+
Cys
GCA
[ENA]
¢þ
>WENV181414951
OGCL01002446
[OGCL] hot springs metagenome; Hot spring water
11988
12061
+
Cys
GCA
[ENA]
¢þ
>W141142449
AWQR01000031
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
51743
51816
+
Cys
GCA
[ENA]
¡û
>W141278794
JAFU01000004
Betaproteobacteria
Acidovorax sp. JHL-3 [JAFU]
21854
21781
-
Cys
GCA
[ENA]
¡û
>WENV183725628
PJQF01004216
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
307
234
-
Cys
GCA
[ENA]
¢þ
>WENV183743660
PJUJ01015725
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
384
457
+
Cys
GCA
[ENA]
¢þ
>WENV183744912
PJUL01000623
[PJUL] feces metagenome; Chicken feces enriched on filter paper
19418
19491
+
Cys
GCA
[ENA]
¢þ
>WENV183745046
PJUL01001591
[PJUL] feces metagenome; Chicken feces enriched on filter paper
3235
3162
-
Cys
GCA
[ENA]
¢þ
>WENV170011501
APMI01069992
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1484
1557
+
Cys
GCA
[ENA]
¢þ
>WENV170602860
FUWD010270878
[FUWD] metagenome; unknown
88
15
-
Cys
GCA
[ENA]
¢þ
>WENV170705389
LNAO01000032
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4852
4779
-
Cys
GCA
[ENA]
¢þ
>WENV170706397
LNAP01002822
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
38706
38633
-
Cys
GCA
[ENA]
¢þ
>WENV170711677
LNFM01006449
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13085
13012
-
Cys
GCA
[ENA]
¢þ
>C191099873
CP033069
Betaproteobacteria
Acidovorax sp. 1608163 [CP033069]
1726576
1726649
+
Cys
GCA
-
¡û
>W09133913
ACQT01000031
Betaproteobacteria
Acidovorax delafieldii 2AN [ACQT]
16539
16466
-
Cys
GCA
[ENA]
¡û
>W1910179205
BJHU01000035
Betaproteobacteria
Acidovorax sp. NB1 [BJHU]
370350
370277
-
Cys
GCA
[ENA]
¡û
>W1910699752
MERV01000012
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_01_FULL_64_960 [MERV]
76166
76093
-
Cys
GCA
[ENA]
¡û
>W1910699783
MERW01000002
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_02_FULL_64_19 [MERW]
3501
3428
-
Cys
GCA
[ENA]
¡û
>W1910699953
MESB01000054
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_65_48 [MESB]
33550
33623
+
Cys
GCA
[ENA]
¡û
>W1910700285
MESJ01000038
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_64_33 [MESJ]
37152
37079
-
Cys
GCA
[ENA]
¡û
>W1910700387
MESL01000051
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_65_40 [MESL]
21099
21172
+
Cys
GCA
[ENA]
¡û
>W1910726031
MGPD01000032
Betaproteobacteria
Curvibacter sp. RIFCSPHIGHO2_12_FULL_63_18 [MGPD]
548535
548462
-
Cys
GCA
[ENA]
¡û
>W1911114311
NOIG01000004
Betaproteobacteria
Acidovorax kalamii KNDSW-TSA6 [NOIG]
694568
694641
+
Cys
GCA
[ENA]
¡û
>W1911139404
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
507269
507342
+
Cys
GCA
[ENA]
¡û
>W1911647693
QAJR01000015
Betaproteobacteria
Acidovorax sp. FJL06 [QAJR]
49461
49534
+
Cys
GCA
[ENA]
¡û
>W1911768533
QXGR01000005
Betaproteobacteria
Simplicispira lacusdiani CPCC 100842 [QXGR]
284679
284606
-
Cys
GCA
[ENA]
¡û
>W1911770728
QXJC01000001
Betaproteobacteria
Simplicispira hankyongi NY-02 [QXJC]
969136
969063
-
Cys
GCA
[ENA]
¡û
>SRA1001766
SRR001308.41882
Metagenomic characterization of a wastewater treatment plant (SRP000180)
106
179
+
Cys
GCA
[SRA]
>SRA1001960
SRR001308.149161
Metagenomic characterization of a wastewater treatment plant (SRP000180)
77
150
+
Cys
GCA
[SRA]
>W1810071635
PEEV01000001
Betaproteobacteria
Acidovorax sp. 56 [PEEV]
1477721
1477648
-
Cys
GCA
[ENA]
¡û
>W1810072500
PEFJ01000001
Betaproteobacteria
Acidovorax sp. 62 [PEFJ]
2196020
2195947
-
Cys
GCA
[ENA]
¡û
>SRA1002311
SRR001308.369796
Metagenomic characterization of a wastewater treatment plant (SRP000180)
113
40
-
Cys
GCA
[SRA]
>W1810089243
PGEP01000001
Betaproteobacteria
Acidovorax sp. 69 [PGEP]
3342732
3342659
-
Cys
GCA
[ENA]
¡û
>W1810305905
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
164641
164714
+
Cys
GCA
[ENA]
¡û
>W1810474416
QAIH01000034
Betaproteobacteria
Acidovorax sp. HMWF029 [QAIH]
5059
4986
-
Cys
GCA
[ENA]
¡û
>W1810474708
QAIM01000595
Betaproteobacteria
Acidovorax sp. HMWF018 [QAIM]
19711
19638
-
Cys
GCA
[ENA]
¡û
>W1810513797
QBTZ01000001
Betaproteobacteria
Acidovorax sp. 107 [QBTZ]
1005283
1005356
+
Cys
GCA
[ENA]
¡û
>W1810573073
QEKM01000001
Betaproteobacteria
Simplicispira sp. 125 [QEKM]
545094
545167
+
Cys
GCA
[ENA]
¡û
>W1810573548
QEKU01000001
Betaproteobacteria
Acidovorax sp. 99 [QEKU]
389805
389732
-
Cys
GCA
[ENA]
¡û
>W1810683052
QKVP01000005
Betaproteobacteria
Acidovorax sp. ST3 [QKVP]
226549
226622
+
Cys
GCA
[ENA]
¡û
>W1810697082
QLTU01000013
Betaproteobacteria
Acidovorax defluvii DSM 12644 [QLTU]
91310
91237
-
Cys
GCA
[ENA]
¡û
>W1810750711
QOZT01000098
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
1219
1146
-
Cys
GCA
[ENA]
¡û
>W1810884737
QUMV01000001
Betaproteobacteria
Simplicispira sp. 110 [QUMV]
889349
889422
+
Cys
GCA
[ENA]
¡û
>W1511518956
JXYQ01000082
Betaproteobacteria
Acidovorax temperans KY4 [JXYQ]
31566
31639
+
Cys
GCA
[ENA]
¡û
>W11156538
AFBG01000018
Betaproteobacteria
Acidovorax radicis N35 [AFBG]
339956
340029
+
Cys
GCA
[ENA]
¡û
>W11156584
AFBH01000012
Betaproteobacteria
Acidovorax radicis N35v [AFBH]
339923
339996
+
Cys
GCA
[ENA]
¡û
>W121019092
AGTS01000101
Betaproteobacteria
Acidovorax sp. NO-1 [AGTS]
106554
106481
-
Cys
GCA
[ENA]
¡û
>C131008682
CP003872
Betaproteobacteria
Acidovorax sp. KKS102 [CP003872]
3496963
3496890
-
Cys
GCA
[Ensembl]
¡û
>W1610623705
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
33655
33728
+
Cys
GCA
[ENA]
¡û
>W1610723820
LMDQ01000014
Betaproteobacteria
Acidovorax sp. Root402 [LMDQ]
1031830
1031757
-
Cys
GCA
[ENA]
¡û
>W1610727711
LMGP01000017
Betaproteobacteria
Acidovorax sp. Root568 [LMGP]
228922
228995
+
Cys
GCA
[ENA]
¡û
>W1610728986
LMHQ01000003
Betaproteobacteria
Acidovorax sp. Root70 [LMHQ]
38040
38113
+
Cys
GCA
[ENA]
¡û
>W1610730840
LMJC01000031
Betaproteobacteria
Acidovorax sp. Root267 [LMJC]
210909
210982
+
Cys
GCA
[ENA]
¡û
>W1610731039
LMJH01000001
Betaproteobacteria
Acidovorax sp. Root275 [LMJH]
346150
346223
+
Cys
GCA
[ENA]
¡û
>W1610734739
LMLY01000025
Betaproteobacteria
Acidovorax sp. Leaf76 [LMLY]
158265
158192
-
Cys
GCA
[ENA]
¡û
>W1610734796
LMLZ01000021
Betaproteobacteria
Acidovorax sp. Leaf78 [LMLZ]
157779
157706
-
Cys
GCA
[ENA]
¡û
>W1610734959
LMMC01000024
Betaproteobacteria
Acidovorax sp. Leaf84 [LMMC]
243300
243227
-
Cys
GCA
[ENA]
¡û
>W1610738334
LMOV01000024
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
352836
352763
-
Cys
GCA
[ENA]
¡û
>W1610739372
LMPT01000019
Betaproteobacteria
Acidovorax sp. Leaf191 [LMPT]
590703
590630
-
Cys
GCA
[ENA]
¡û
>W1610912464
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
2519
2446
-
Cys
GCA
[ENA]
¡û
>W1610912985
LSIU01000786
Betaproteobacteria
Comamonadaceae bacterium CCH4-C5 [LSIU]
12153
12226
+
Cys
GCA
[ENA]
¡û
>W1610915136
LSKS01000561
Betaproteobacteria
Acidovorax sp. CCH12-A4 [LSKS]
105
178
+
Cys
GCA
[ENA]
¡û
>W1610935944
LUKZ01000019
Betaproteobacteria
Acidovorax sp. GW101-3H11 [LUKZ]
57620
57693
+
Cys
GCA
[ENA]
¡û
>W1710532514
FNQJ01000007
Betaproteobacteria
Acidovorax soli [FNQJ]
55549
55622
+
Cys
GCA
[ENA]
¡û
>W1710551524
FOGD01000002
Betaproteobacteria
Giesbergeria anulus [FOGD]
111563
111636
+
Cys
GCA
[ENA]
¡û
>W1710561136
FONX01000011
Betaproteobacteria
Paracidovorax wautersii [FONX]
14401
14474
+
Cys
GCA
[ENA]
¡û
>W1710754795
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
33655
33728
+
Cys
GCA
[ENA]
¡û
Identical group No.788608 (10 seq.)
>WENV181188765
OEOE01351736
[OEOE] activated sludge metagenome; Activated Sludge
177
104
-
Cys
GCA
[ENA]
¢þ
>WENV170709860
LNFM01000816
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
55401
55474
+
Cys
GCA
[ENA]
¢þ
>SRA1001876
SRR001308.105433
Metagenomic characterization of a wastewater treatment plant (SRP000180)
165
238
+
Cys
GCA
[SRA]
>W1810534751
QDAH01000113
Alphaproteobacteria
Microvirga sp. KLBC 81 [QDAH]
6053
6126
+
Cys
GCA
[ENA]
¡û
>W1810659808
QJKM01000020
Alphaproteobacteria
Rhizobium terrae NAU-18 [QJKM]
40271
40344
+
Cys
GCA
[ENA]
¡û
>C151101642
HG938353
Alphaproteobacteria
Neorhizobium galegae bv. orientalis str. HAMBI 540 [HG938353]
1418960
1419033
+
Cys
GCA
[Ensembl]
¡û
>C151101690
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
1341119
1341192
+
Cys
GCA
[Ensembl]
¡û
>W1510053021
CCRJ01000014
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
75101
75028
-
Cys
GCA
[ENA]
¡û
>W1511624279
LCYG01000043
Alphaproteobacteria
Microvirga vignae BR3299 [LCYG]
19583
19510
-
Cys
GCA
[ENA]
¡û
>W1710606391
FWXU01000004
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
42086
42159
+
Cys
GCA
[ENA]
¡û
Identical group No.794043 (1 seq.)
>SRA1001760
SRR001308.37809
Metagenomic characterization of a wastewater treatment plant (SRP000180)
39
112
+
Cys
GCA
[SRA]
Identical group No.794118 (2 seq.)
>SRA1001715
SRR001308.11032
Metagenomic characterization of a wastewater treatment plant (SRP000180)
110
40
-
Cys
GCA
[SRA]
>SRA1001792
SRR001308.58355
Metagenomic characterization of a wastewater treatment plant (SRP000180)
263
193
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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