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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.257970 (2 seq.)
>SRA1002451
SRR001324.13158
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
84
+
Trp
CCA
[SRA]
>SRA1002452
SRR001324.16150
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
7
84
+
Trp
CCA
[SRA]
Identical group No.294573 (5 seq.)
>WENV170017717
BARU01017693
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
736
662
-
Trp
CCA
[ENA]
¢þ
>WENV170018248
BARV01030496
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
95
21
-
Trp
CCA
[ENA]
¢þ
>WENV170018319
BARW01000663
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
1417
1341
-
Trp
CCA
[ENA]
¢þ
>WENV170018396
BARW01008280
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
451
375
-
Trp
CCA
[ENA]
¢þ
>SRA1002417
SRR001323.88395
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
106
30
-
Trp
CCA
[SRA]
Identical group No.371918 (1 seq.)
>SRA1002517
SRR001325.75754
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
97
21
-
Trp
CCA
[SRA]
Identical group No.371919 (1 seq.)
>SRA1002521
SRR001325.86047
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
30
106
+
Trp
CCA
[SRA]
Identical group No.429108 (1 seq.)
>SRA1002337
SRR001322.18021
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
89
13
-
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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