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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GGC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250630 (3 seq.)
>SRA1002538
SRR001326.2882
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
31
107
+
Ala
GGC
[SRA]
>SRA1002544
SRR001326.39893
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
24
100
+
Ala
GGC
[SRA]
>SRA1002553
SRR001326.73461
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
9
85
+
Ala
GGC
[SRA]
Identical group No.250631 (1 seq.)
>SRA1002541
SRR001326.24664
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
91
14
-
Ala
GGC
[SRA]
Identical group No.266333 (1 seq.)
>SRA1002342
SRR001322.29444
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
78
1
-
Ala
GGC
[SRA]
Identical group No.266336 (1 seq.)
>SRA1002368
SRR001322.92104
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
105
28
-
Ala
GGC
[SRA]
Identical group No.573347 (1 seq.)
>SRA1002472
SRR001324.53891
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
81
8
-
Ala
GGC
[SRA]
Identical group No.726863 (1 seq.)
>SRA1002477
SRR001324.63276
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
18
-
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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