This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219101 (1 seq.)
>SRA1002546
SRR001326.45406
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
116
40
-
Thr
TGT
[SRA]
Identical group No.268535 (1 seq.)
>SRA1002372
SRR001322.108536
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
115
39
-
Thr
TGT
[SRA]
Identical group No.282298 (20 seq.)
>W1711408930
MGNM01000078
Chloroflexota
Chloroflexi bacterium RBG_16_51_9 [MGNM]
1281
1353
+
Thr
TGT
[ENA]
¡û
>W1711584129
MNYD01000102
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_19 [MNYD]
1768
1840
+
Thr
TGT
[ENA]
¡û
>WENV180067770
MPLZ02013405
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
370
298
-
Thr
TGT
[ENA]
¢þ
>WENV180079732
MPMB02180628
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1304
1232
-
Thr
TGT
[ENA]
¢þ
>WENV181410948
OGCI01008920
[OGCI] hot springs metagenome; Hot spring water
744
816
+
Thr
TGT
[ENA]
¢þ
>WENV183674019
ORJL011338850
[ORJL] groundwater metagenome; groundwater
201
129
-
Thr
TGT
[ENA]
¢þ
>WENV183675728
ORJL011543685
[ORJL] groundwater metagenome; groundwater
3135
3063
-
Thr
TGT
[ENA]
¢þ
>WENV183800060
PVBE010562700
[PVBE] marine metagenome; water
1126
1198
+
Thr
TGT
[ENA]
¢þ
>WENV183806825
PVBE011149714
[PVBE] marine metagenome; water
20769
20697
-
Thr
TGT
[ENA]
¢þ
>WENV170001096
AGBJ01004382
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
335
262
-
Thr
TGT
[ENA]
¢þ
>WENV170223797
CEQE01005937
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
603
675
+
Thr
TGT
[ENA]
¢þ
>WENV170622837
FUWD013123171
[FUWD] metagenome; unknown
1090
1017
-
Thr
TGT
[ENA]
¢þ
>WENV170631055
FUWD013336729
[FUWD] metagenome; unknown
1090
1017
-
Thr
TGT
[ENA]
¢þ
>WENV170720222
LSQX01145255
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11771
11843
+
Thr
TGT
[ENA]
¢þ
>SRA1002343
SRR001322.36815
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
20
-
Thr
TGT
[SRA]
>SRA1002422
SRR001323.100658
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
8
80
+
Thr
TGT
[SRA]
>SRA1002549
SRR001326.49956
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
12
84
+
Thr
TGT
[SRA]
>SRA1029815
SRR035087.186749
454 Sequencing (SRP001808)
96
23
-
Thr
TGT
[SRA]
>SRA1034962
SRR035089.207432
454 Sequencing (SRP001810)
461
388
-
Thr
TGT
[SRA]
>SRA1035468
SRR035089.311197
454 Sequencing (SRP001810)
35
108
+
Thr
TGT
[SRA]
Identical group No.313001 (12 seq.)
>W131157688
AQSP01000086
Unclassified
Aminicenantes bacterium SCGC AAA252-A02 OP8 bacterium SCGC AAA252-A02 [AQSP]
568
640
+
Thr
TGT
[ENA]
¡û
>W131193419
ASOH01000005
Unclassified
Aminicenantes bacterium SCGC AAA252-G04 OP8 bacterium SCGC AAA252-G04 [ASOH]
1353
1281
-
Thr
TGT
[ENA]
¡û
>W131193675
ASOT01000022
Unclassified
Aminicenantes bacterium SCGC AAA252-L10 OP8 bacterium SCGC AAA252-L10 [ASOT]
565
493
-
Thr
TGT
[ENA]
¡û
>WENV180234614
OBCS01004939
[OBCS] metagenome; diffuse fluid
266
194
-
Thr
TGT
[ENA]
¢þ
>WENV181411611
OGCI01034516
[OGCI] hot springs metagenome; Hot spring water
676
604
-
Thr
TGT
[ENA]
¢þ
>W141139624
AWNV01000059
Unclassified
Candidatus Aminicenans sakinawicola sakinawicola JGI OTU-1 [AWNV]
568
640
+
Thr
TGT
[ENA]
¡û
>WENV183514608
OMKS01025007
[OMKS] sediment metagenome; hot spring sediment
1162
1234
+
Thr
TGT
[ENA]
¢þ
>WENV170016662
BARS01000599
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
1278
1350
+
Thr
TGT
[ENA]
¢þ
>WENV170016988
BARS01037788
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
91
19
-
Thr
TGT
[ENA]
¢þ
>WENV170673247
LAZR01009274
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
3750
3822
+
Thr
TGT
[ENA]
¢þ
>SRA1002446
SRR001324.6395
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
73
+
Thr
TGT
[SRA]
>SRA1002447
SRR001324.6417
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
73
+
Thr
TGT
[SRA]
Identical group No.447957 (1 seq.)
>SRA1002464
SRR001324.39147
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Thr
TGT
[SRA]
Identical group No.469169 (1 seq.)
>SRA1002333
SRR001322.11634
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
87
+
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK