tRNA genes clustered and arranged according to each identical group

Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)

Anticodon = TGT

HIT: 6 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.219101 (1 seq.)
>SRA1002546 SRR001326.45406 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 116 40 - Thr TGT [SRA]
Identical group No.268535 (1 seq.)
>SRA1002372 SRR001322.108536 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 115 39 - Thr TGT [SRA]
Identical group No.282298 (20 seq.)
>W1711408930 MGNM01000078 Chloroflexota Chloroflexi bacterium RBG_16_51_9 [MGNM] 1281 1353 + Thr TGT [ENA] ¡û
>W1711584129 MNYD01000102 Chloroflexota Dehalococcoidia bacterium CG2_30_46_19 [MNYD] 1768 1840 + Thr TGT [ENA] ¡û
>WENV180067770 MPLZ02013405 [MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter 370 298 - Thr TGT [ENA] ¢þ
>WENV180079732 MPMB02180628 [MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter 1304 1232 - Thr TGT [ENA] ¢þ
>WENV181410948 OGCI01008920 [OGCI] hot springs metagenome; Hot spring water 744 816 + Thr TGT [ENA] ¢þ
>WENV183674019 ORJL011338850 [ORJL] groundwater metagenome; groundwater 201 129 - Thr TGT [ENA] ¢þ
>WENV183675728 ORJL011543685 [ORJL] groundwater metagenome; groundwater 3135 3063 - Thr TGT [ENA] ¢þ
>WENV183800060 PVBE010562700 [PVBE] marine metagenome; water 1126 1198 + Thr TGT [ENA] ¢þ
>WENV183806825 PVBE011149714 [PVBE] marine metagenome; water 20769 20697 - Thr TGT [ENA] ¢þ
>WENV170001096 AGBJ01004382 [AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East 335 262 - Thr TGT [ENA] ¢þ
>WENV170223797 CEQE01005937 [CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 603 675 + Thr TGT [ENA] ¢þ
>WENV170622837 FUWD013123171 [FUWD] metagenome; unknown 1090 1017 - Thr TGT [ENA] ¢þ
>WENV170631055 FUWD013336729 [FUWD] metagenome; unknown 1090 1017 - Thr TGT [ENA] ¢þ
>WENV170720222 LSQX01145255 [LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition 11771 11843 + Thr TGT [ENA] ¢þ
>SRA1002343 SRR001322.36815 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 92 20 - Thr TGT [SRA]
>SRA1002422 SRR001323.100658 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 8 80 + Thr TGT [SRA]
>SRA1002549 SRR001326.49956 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 12 84 + Thr TGT [SRA]
>SRA1029815 SRR035087.186749 454 Sequencing (SRP001808) 96 23 - Thr TGT [SRA]
>SRA1034962 SRR035089.207432 454 Sequencing (SRP001810) 461 388 - Thr TGT [SRA]
>SRA1035468 SRR035089.311197 454 Sequencing (SRP001810) 35 108 + Thr TGT [SRA]
Identical group No.313001 (12 seq.)
>W131157688 AQSP01000086 Unclassified Aminicenantes bacterium SCGC AAA252-A02 OP8 bacterium SCGC AAA252-A02 [AQSP] 568 640 + Thr TGT [ENA] ¡û
>W131193419 ASOH01000005 Unclassified Aminicenantes bacterium SCGC AAA252-G04 OP8 bacterium SCGC AAA252-G04 [ASOH] 1353 1281 - Thr TGT [ENA] ¡û
>W131193675 ASOT01000022 Unclassified Aminicenantes bacterium SCGC AAA252-L10 OP8 bacterium SCGC AAA252-L10 [ASOT] 565 493 - Thr TGT [ENA] ¡û
>WENV180234614 OBCS01004939 [OBCS] metagenome; diffuse fluid 266 194 - Thr TGT [ENA] ¢þ
>WENV181411611 OGCI01034516 [OGCI] hot springs metagenome; Hot spring water 676 604 - Thr TGT [ENA] ¢þ
>W141139624 AWNV01000059 Unclassified Candidatus Aminicenans sakinawicola sakinawicola JGI OTU-1 [AWNV] 568 640 + Thr TGT [ENA] ¡û
>WENV183514608 OMKS01025007 [OMKS] sediment metagenome; hot spring sediment 1162 1234 + Thr TGT [ENA] ¢þ
>WENV170016662 BARS01000599 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 1278 1350 + Thr TGT [ENA] ¢þ
>WENV170016988 BARS01037788 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 91 19 - Thr TGT [ENA] ¢þ
>WENV170673247 LAZR01009274 [LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment 3750 3822 + Thr TGT [ENA] ¢þ
>SRA1002446 SRR001324.6395 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 1 73 + Thr TGT [SRA]
>SRA1002447 SRR001324.6417 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 1 73 + Thr TGT [SRA]
Identical group No.447957 (1 seq.)
>SRA1002464 SRR001324.39147 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 85 11 - Thr TGT [SRA]
Identical group No.469169 (1 seq.)
>SRA1002333 SRR001322.11634 Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183) 15 87 + Thr TGT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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