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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Anticodon = GTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300170 (2 seq.)
>ENV08000801
ABMJ01038652
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
28
103
+
Asp
GTC
[ENA]
¡û
>SRA1000818
SRR001047.159224
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
28
103
+
Asp
GTC
[SRA]
Identical group No.672169 (2 seq.)
>ENV08000817
ABMJ01056263
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
84
10
-
Asp
GTC
[ENA]
¡û
>SRA1000814
SRR001047.137604
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
84
10
-
Asp
GTC
[SRA]
Identical group No.672780 (2 seq.)
>ENV08000790
ABMJ01022120
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
74
2
-
Pseudo
GTC
[ENA]
¡û
>SRA1000789
SRR001047.65085
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
74
2
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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