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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GCG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237730 (1 seq.)
>A171000297
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1393473
1393549
+
Arg
GCG
-
¡û
Identical group No.274417 (12 seq.)
>A171003531
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1584811
1584735
-
Arg
GCG
-
¡û
>WENV180341463
OBLI01133411
[OBLI] pig gut metagenome; faeces
379
303
-
Arg
GCG
[ENA]
¢þ
>WENV180628378
OCQO01112387
[OCQO] human gut metagenome; human gut
114
39
-
Arg
GCG
[ENA]
¢þ
>WENV181606833
OGLM01001369
[OGLM] metagenome; Human gut stool
21353
21277
-
Arg
GCG
[ENA]
¢þ
>WENV181655722
OGOB01000767
[OGOB] metagenome; Human gut stool
9992
9916
-
Arg
GCG
[ENA]
¢þ
>WENV182524081
OIWT01000033
[OIWT] human gut metagenome; faeces
38482
38406
-
Arg
GCG
[ENA]
¢þ
>WENV183045244
OLGE01007294
[OLGE] human gut metagenome; faeces
4014
3938
-
Arg
GCG
[ENA]
¢þ
>WENV183382809
OLYL01018211
[OLYL] human gut metagenome; feces
863
787
-
Arg
GCG
[ENA]
¢þ
>WENV183410078
OMAG01054396
[OMAG] human gut metagenome; feces
196
272
+
Arg
GCG
[ENA]
¢þ
>WENV183438992
OMCF01018211
[OMCF] human gut metagenome; feces
863
787
-
Arg
GCG
[ENA]
¢þ
>W1610011058
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
391357
391433
+
Arg
GCG
[ENA]
¡û
>W1610799742
LOPS01000004
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
4537
4461
-
Arg
GCG
[ENA]
¡û
Identical group No.275021 (10 seq.)
>A171003688
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
146678
146752
+
Arg
GCG
-
¡û
>WENV181036788
ODXP01003062
[ODXP] human metagenome; G_DNA_Stool
4828
4902
+
Arg
GCG
[ENA]
¢þ
>WENV181089103
OEBA01012485
[OEBA] human metagenome; G_DNA_Stool
2700
2626
-
Arg
GCG
[ENA]
¢þ
>WENV181702080
OGPH01016521
[OGPH] human gut metagenome; faeces
843
917
+
Arg
GCG
[ENA]
¢þ
>WENV182180913
OHNO01028870
[OHNO] human gut metagenome; feces
622
696
+
Arg
GCG
[ENA]
¢þ
>WENV182537334
OIXH01005829
[OIXH] human gut metagenome; faeces
6135
6209
+
Arg
GCG
[ENA]
¢þ
>WENV183039138
OLGB01003507
[OLGB] human gut metagenome; faeces
7548
7474
-
Arg
GCG
[ENA]
¢þ
>WENV183042557
OLGD01005619
[OLGD] human gut metagenome; faeces
2914
2840
-
Arg
GCG
[ENA]
¢þ
>WENV170972787
MTKY01000704
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1307
1233
-
Arg
GCG
[ENA]
¢þ
>W1610082866
CAJE01000020
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
26968
26894
-
Arg
GCG
[ENA]
¡û
Identical group No.304173 (7 seq.)
>A171003621
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
642845
642918
+
Arg
GCG
-
¡û
>A171006625
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1507289
1507362
+
Arg
GCG
-
¡û
>W141000052
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
2705
2778
+
Arg
GCG
[ENA]
¡û
>W141000090
AADL01001524
Unclassified
mine drainage metagenome Group III [AADL]
7652
7579
-
Arg
GCG
[ENA]
¡û
>W1610000061
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
180003
180076
+
Arg
GCG
[ENA]
¡û
>WENV077060
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
2705
2781
+
Arg
GCG
[ENA]
>WENV077098
AADL01001524
Acid Mine Drainage microbial communities from Richmond mine
7652
7576
-
Arg
GCG
[ENA]
Identical group No.306481 (3 seq.)
>A171007754
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1032658
1032585
-
Arg
GCG
-
¡û
>A171007791
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1042177
1042104
-
Arg
GCG
-
¡û
>ENV09002177
ACXJ01010829
Mine drainage metagenome Contig1
3589
3665
+
Arg
GCG
[ENA]
¡û
Identical group No.327941 (3 seq.)
>A171006501
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
90707
90783
+
Arg
GCG
-
¡û
>WENV180666701
OCVV011219117
[OCVV] gut metagenome; gut
691
767
+
Arg
GCG
[ENA]
¢þ
>WENV180666702
OCVV011219117
[OCVV] gut metagenome; gut
691
767
+
Arg
GCG
[ENA]
¢þ
Identical group No.352469 (1 seq.)
>At2035
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
385411
385338
-
Arg
GCG
[Ensembl]
¡û
Identical group No.361491 (1 seq.)
>A178000308
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
579773
579903
+
Arg
GCG
-
¡û
Identical group No.372628 (1 seq.)
>A171002543
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1378260
1378184
-
Arg
GCG
-
¡û
Identical group No.373683 (1 seq.)
>At1733
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
256371
256444
+
Arg
GCG
[Ensembl]
¡û
Identical group No.388916 (2 seq.)
>At2003
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1259685
1259612
-
Arg
GCG
[Ensembl]
¡û
>W1911681178
QJSM01000034
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
15220
15145
-
Arg
GCG
[ENA]
¡û
Identical group No.391910 (1 seq.)
>A178000134
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
370437
370311
-
Arg
GCG
-
¡û
Identical group No.446360 (1 seq.)
>A173000244
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
18219
18294
+
Arg
GCG
-
¡û
Identical group No.770978 (1 seq.)
>C151068545
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
707312
707387
+
Arg
GCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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