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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GTA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241263 (1 seq.)
>A178000375
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
552349
552462
+
Tyr
GTA
-
¡û
Identical group No.244889 (1 seq.)
>A178000364
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
244338
244227
-
Tyr
GTA
-
¡û
Identical group No.254674 (4 seq.)
>A17A000355
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
193074
192957
-
Tyr
GTA
-
¡û
>A17A000793
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
769091
769210
+
Tyr
GTA
-
¡û
>A179000146
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
193074
192958
-
Tyr
GTA
-
¡û
>A179000339
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
769091
769209
+
Tyr
GTA
-
¡û
Identical group No.256477 (1 seq.)
>A17A000666
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
259490
259379
-
Tyr
GTA
-
¡û
Identical group No.256488 (1 seq.)
>A179000296
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
259490
259379
-
Tyr
GTA
-
¡û
Identical group No.261143 (1 seq.)
>A179000654
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1610273
1610384
+
Tyr
GTA
-
¡û
Identical group No.261153 (1 seq.)
>A17A001499
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1610273
1610384
+
Tyr
GTA
-
¡û
Identical group No.269530 (1 seq.)
>A17A001303
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1104094
1104206
+
Tyr
GTA
-
¡û
Identical group No.269537 (1 seq.)
>A179000554
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1104094
1104206
+
Tyr
GTA
-
¡û
Identical group No.372647 (1 seq.)
>A17A000055
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1164678
1164793
+
Tyr
GTA
-
¡û
Identical group No.372668 (1 seq.)
>A179000024
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1164678
1164793
+
Tyr
GTA
-
¡û
Identical group No.507988 (2 seq.)
>A178000369
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
620889
620790
-
Tyr
GTA
-
¡û
>A178000670
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1483815
1483716
-
Tyr
GTA
-
¡û
Identical group No.541363 (1 seq.)
>At2044
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1061594
1061497
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.564832 (1 seq.)
>At1762
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
690766
690672
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.604601 (1 seq.)
>At1994
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
562317
562220
-
Tyr
GTA
[Ensembl]
¡û
Identical group No.612946 (2 seq.)
>A179000742
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1165176
1165279
+
Tyr
GTA
-
¡û
>A179000744
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1168628
1168731
+
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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