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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TCT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241221 (9 seq.)
>A171003693
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
356396
356473
+
Arg
TCT
-
¡û
>WENV180223366
OBBG01007351
[OBBG] human gut metagenome; human gut
371
448
+
Arg
TCT
[ENA]
¢þ
>WENV181035958
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
76215
76292
+
Arg
TCT
[ENA]
¢þ
>WENV181088819
OEBA01005746
[OEBA] human metagenome; G_DNA_Stool
4752
4675
-
Arg
TCT
[ENA]
¢þ
>WENV181702096
OGPH01017748
[OGPH] human gut metagenome; faeces
1022
1099
+
Arg
TCT
[ENA]
¢þ
>WENV182058588
OHEP01024067
[OHEP] human gut metagenome; feces
116
39
-
Arg
TCT
[ENA]
¢þ
>WENV182536310
OIXH01000420
[OIXH] human gut metagenome; faeces
31344
31267
-
Arg
TCT
[ENA]
¢þ
>WENV183038616
OLGB01000850
[OLGB] human gut metagenome; faeces
30827
30750
-
Arg
TCT
[ENA]
¢þ
>WENV183041309
OLGD01000561
[OLGD] human gut metagenome; faeces
31344
31267
-
Arg
TCT
[ENA]
¢þ
Identical group No.250759 (4 seq.)
>A171001370
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1028683
1028608
-
Arg
TCT
-
¡û
>W1610000637
ABSD01000003
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
5768
5693
-
Arg
TCT
[ENA]
¡û
>W1610000674
ABSD01000039
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
30961
31037
+
Arg
TCT
[ENA]
¡û
>W1610001711
ADFG01000039
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
446
371
-
Arg
TCT
[ENA]
¡û
Identical group No.253198 (2 seq.)
>At1989
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
192481
192407
-
Arg
TCT
[Ensembl]
¡û
>At2026
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1477812
1477886
+
Arg
TCT
[Ensembl]
¡û
Identical group No.254657 (1 seq.)
>A171002874
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1083905
1083981
+
Arg
TCT
-
¡û
Identical group No.256436 (1 seq.)
>A171000310
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1526186
1526110
-
Arg
TCT
-
¡û
Identical group No.256676 (2 seq.)
>At1773
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1144489
1144415
-
Arg
TCT
[Ensembl]
¡û
>W1910469100
FWYE01000003
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
173485
173409
-
Arg
TCT
[ENA]
¡û
Identical group No.264092 (2 seq.)
>A173000375
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1045915
1045840
-
Arg
TCT
-
¡û
>A173000381
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1049349
1049273
-
Arg
TCT
-
¡û
Identical group No.269631 (1 seq.)
>CL171000018
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
24622
24536
-
Arg
TCT
-
¡û
Identical group No.641260 (1 seq.)
>CL171000017
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
179762
179672
-
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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