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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274416 (21 seq.)
>A171002542
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1408158
1408084
-
Lys
TTT
-
¡û
>A171003530
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1617287
1617213
-
Lys
TTT
-
¡û
>A171006500
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
60113
60187
+
Lys
TTT
-
¡û
>WENV180326180
OBKS01036430
[OBKS] human gut metagenome; human gut
158
232
+
Lys
TTT
[ENA]
¢þ
>WENV180341368
OBLI01116279
[OBLI] pig gut metagenome; faeces
658
584
-
Lys
TTT
[ENA]
¢þ
>WENV180666191
OCVV011206004
[OCVV] gut metagenome; gut
85
11
-
Lys
TTT
[ENA]
¢þ
>WENV180666192
OCVV011206004
[OCVV] gut metagenome; gut
85
11
-
Lys
TTT
[ENA]
¢þ
>WENV180667023
OCVV011225306
[OCVV] gut metagenome; gut
85
11
-
Lys
TTT
[ENA]
¢þ
>WENV180667024
OCVV011225306
[OCVV] gut metagenome; gut
85
11
-
Lys
TTT
[ENA]
¢þ
>WENV180667025
OCVV011225313
[OCVV] gut metagenome; gut
302
228
-
Lys
TTT
[ENA]
¢þ
>WENV180667026
OCVV011225313
[OCVV] gut metagenome; gut
302
228
-
Lys
TTT
[ENA]
¢þ
>WENV181606860
OGLM01001464
[OGLM] metagenome; Human gut stool
18972
18898
-
Lys
TTT
[ENA]
¢þ
>WENV181655922
OGOB01004574
[OGOB] metagenome; Human gut stool
2102
2028
-
Lys
TTT
[ENA]
¢þ
>WENV181772770
OGRD01016974
[OGRD] human gut metagenome; faeces
1250
1176
-
Lys
TTT
[ENA]
¢þ
>WENV182524080
OIWT01000033
[OIWT] human gut metagenome; faeces
70939
70865
-
Lys
TTT
[ENA]
¢þ
>WENV183046040
OLGE01054960
[OLGE] human gut metagenome; faeces
342
268
-
Lys
TTT
[ENA]
¢þ
>WENV183382767
OLYL01013945
[OLYL] human gut metagenome; feces
1452
1378
-
Lys
TTT
[ENA]
¢þ
>WENV183409813
OMAG01009383
[OMAG] human gut metagenome; feces
718
792
+
Lys
TTT
[ENA]
¢þ
>WENV183438950
OMCF01013945
[OMCF] human gut metagenome; feces
1452
1378
-
Lys
TTT
[ENA]
¢þ
>WENV183458385
OMDM01010140
[OMDM] human gut metagenome; feces
2014
1940
-
Lys
TTT
[ENA]
¢þ
>W1610011057
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
358881
358955
+
Lys
TTT
[ENA]
¡û
Identical group No.284780 (21 seq.)
>A171005740
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1418461
1418387
-
Lys
TTT
-
¡û
>WENV180240534
OBDD01008800
[OBDD] human gut metagenome; human gut
851
775
-
Lys
TTT
[ENA]
¢þ
>WENV180340567
OBLI01029964
[OBLI] pig gut metagenome; faeces
1641
1565
-
Lys
TTT
[ENA]
¢þ
>WENV180518636
OCHD01151354
[OCHD] human gut metagenome; human gut
103
27
-
Lys
TTT
[ENA]
¢þ
>WENV180567604
OCLL01113088
[OCLL] human gut metagenome; human gut
234
158
-
Lys
TTT
[ENA]
¢þ
>WENV182061387
OHET01026483
[OHET] human gut metagenome; feces
498
422
-
Lys
TTT
[ENA]
¢þ
>WENV182072313
OHFM01027122
[OHFM] human gut metagenome; feces
581
657
+
Lys
TTT
[ENA]
¢þ
>WENV182196568
OHPF01026483
[OHPF] human gut metagenome; feces
498
422
-
Lys
TTT
[ENA]
¢þ
>WENV182220798
OHQS01007490
[OHQS] human gut metagenome; feces
1913
1989
+
Lys
TTT
[ENA]
¢þ
>WENV182257402
OHTF01019141
[OHTF] human gut metagenome; feces
843
919
+
Lys
TTT
[ENA]
¢þ
>WENV182398955
OIEN01016595
[OIEN] human gut metagenome; human gut
768
844
+
Lys
TTT
[ENA]
¢þ
>WENV182651759
OJMH01003887
[OJMH] human gut metagenome; feces
4620
4544
-
Lys
TTT
[ENA]
¢þ
>WENV182688163
OJOA01076988
[OJOA] human gut metagenome; human gut
340
264
-
Lys
TTT
[ENA]
¢þ
>WENV182885659
OKSC01015900
[OKSC] human gut metagenome; faeces
1628
1704
+
Lys
TTT
[ENA]
¢þ
>WENV182957682
OKWG01039072
[OKWG] human gut metagenome; human gut
584
508
-
Lys
TTT
[ENA]
¢þ
>WENV183076890
OLIW01011783
[OLIW] human gut metagenome; feces
1361
1437
+
Lys
TTT
[ENA]
¢þ
>WENV183385293
OLYN01060118
[OLYN] human gut metagenome; feces
84
8
-
Lys
TTT
[ENA]
¢þ
>WENV183423894
OMBG01011695
[OMBG] human gut metagenome; feces
1799
1875
+
Lys
TTT
[ENA]
¢þ
>WENV183575257
OOCI01000850
[OOCI] human gut metagenome; human gut
4373
4449
+
Lys
TTT
[ENA]
¢þ
>WENV183641864
OQVL01093210
[OQVL] human gut metagenome; human gut
343
267
-
Lys
TTT
[ENA]
¢þ
>WENV183649632
OQVT01003309
[OQVT] human gut metagenome; human gut
3713
3637
-
Lys
TTT
[ENA]
¢þ
Identical group No.304171 (11 seq.)
>A171003635
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1141576
1141501
-
Lys
TTT
-
¡û
>W141000046
AADL01001090
Unclassified
mine drainage metagenome Group III [AADL]
6535
6610
+
Lys
TTT
[ENA]
¡û
>W141000077
AADL01001501
Unclassified
mine drainage metagenome Group III [AADL]
34866
34791
-
Lys
TTT
[ENA]
¡û
>W1910585081
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
404124
404049
-
Lys
TTT
[ENA]
¡û
>W1610000072
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
268642
268567
-
Lys
TTT
[ENA]
¡û
>W1610047582
BBDK01000002
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
26980
26905
-
Lys
TTT
[ENA]
¡û
>W1610642291
LJCQ01000063
Unclassified
Acidiplasma aeolicum V [LJCQ]
5219
5294
+
Lys
TTT
[ENA]
¡û
>W1610670450
LKBG01000001
Unclassified
Acidiplasma aeolicum VT [LKBG]
42958
43033
+
Lys
TTT
[ENA]
¡û
>W1610670484
LKBH01000012
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
8574
8499
-
Lys
TTT
[ENA]
¡û
>WENV077054
AADL01001090
Acid Mine Drainage microbial communities from Richmond mine
6535
6613
+
Lys
TTT
[ENA]
>WENV077085
AADL01001501
Acid Mine Drainage microbial communities from Richmond mine
34866
34788
-
Lys
TTT
[ENA]
Identical group No.304177 (5 seq.)
>A171007749
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1469440
1469367
-
Lys
TTT
-
¡û
>A171007786
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1463617
1463544
-
Lys
TTT
-
¡û
>W141000099
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
11000
10927
-
Lys
TTT
[ENA]
¡û
>ENV09002060
ACXJ01008440
Mine drainage metagenome Contig1
1374
1447
+
Lys
TTT
[ENA]
¡û
>WENV077108
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
11000
10924
-
Lys
TTT
[ENA]
Identical group No.338087 (5 seq.)
>A171001369
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1051752
1051677
-
Lys
TTT
-
¡û
>A171002879
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1281907
1281832
-
Lys
TTT
-
¡û
>W1610000644
ABSD01000008
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
129
54
-
Lys
TTT
[ENA]
¡û
>W1610000673
ABSD01000039
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
7893
7968
+
Lys
TTT
[ENA]
¡û
>W1610001691
ADFG01000007
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
14209
14134
-
Lys
TTT
[ENA]
¡û
Identical group No.352470 (3 seq.)
>At1968
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
413604
413677
+
Lys
TTT
[Ensembl]
¡û
>At2048
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1241835
1241762
-
Lys
TTT
[Ensembl]
¡û
>W1911681163
QJSM01000018
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
47429
47503
+
Lys
TTT
[ENA]
¡û
Identical group No.372595 (1 seq.)
>A171000293
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1243841
1243918
+
Lys
TTT
-
¡û
Identical group No.373685 (2 seq.)
>At1753
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
296263
296190
-
Lys
TTT
[Ensembl]
¡û
>W1910469104
FWYE01000005
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
51785
51711
-
Lys
TTT
[ENA]
¡û
Identical group No.439531 (1 seq.)
>C151068549
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
985493
985567
+
Lys
TTT
-
¡û
Identical group No.440187 (1 seq.)
>A171006639
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
169152
169077
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK