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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1027433
SRR035086.124316
233847
Bacteroidota
TGC
Ala
>SRA1027432
SRR035086.124316
192374
Bacteroidota
GAT
Ile
>SRA1027486
SRR035086.132912
319120
Bacteroidota
CAT
Met
>SRA1027503
SRR035086.137275
117868
Bacteroidota
TAG
Leu
>SRA1027648
SRR035086.166261
176427
Bacteroidota
TGG
Pro
>SRA1027830
SRR035086.203277
364431
Bacteroidota
TCC
Gly
>SRA1027908
SRR035086.217015
200516
Bacteroidota
CAT
Met
>SRA1028082
SRR035086.255052
399285
Bacteroidota
TTC
Glu
>SRA1028083
SRR035086.255366
281130
Bacteroidota
GAA
Phe
>SRA1028132
SRR035086.264956
200516
Bacteroidota
CAT
Met
>SRA1028162
SRR035086.268898
200516
Bacteroidota
CAT
Met
>SRA1028395
SRR035086.316603
240785
Bacteroidota
GTC
Asp
>SRA1028474
SRR035086.335436
181598
Bacteroidota
GTT
Asn
>SRA1028579
SRR035086.363905
181598
Bacteroidota
GTT
Asn
>SRA1028733
SRR035086.412859
233847
Bacteroidota
TGC
Ala
>SRA1028761
SRR035086.427323
181598
Bacteroidota
GTT
Asn
>SRA1027128
SRR035086.68142
340026
Bacteroidota
CAT
Met
>SRA1027139
SRR035086.70224
200516
Bacteroidota
CAT
Met
>SRA1027278
SRR035086.95244
200516
Bacteroidota
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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