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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170765357
LWDU01037247
655365
Alphaproteobacteria
TTC
Glu
>WENV170765402
LWDU01037353
655365
Alphaproteobacteria
TTC
Glu
>WENV170763880
LWDU01023612
273797
Alphaproteobacteria
GGG
Pro
>WENV170765387
LWDU01037346
46086
Alphaproteobacteria
CGA
Ser
>WENV170766340
LWDU01041374
452884
Alphaproteobacteria
CCA
Trp
>WENV170763371
LWDU01008055
455289
Alphaproteobacteria
TTT
Lys
>WENV170765407
LWDU01037362
455289
Alphaproteobacteria
TTT
Lys
>WENV170763257
LWDU01005315
274127
Alphaproteobacteria
GTG
His
>WENV170765384
LWDU01037345
30553
Alphaproteobacteria
GGA
Ser
>WENV170765350
LWDU01037193
30553
Alphaproteobacteria
GGA
Ser
>WENV170765405
LWDU01037357
780331
Alphaproteobacteria
TCC
Gly
>WENV170765351
LWDU01037194
780331
Alphaproteobacteria
TCC
Gly
>WENV170765362
LWDU01037302
454510
Alphaproteobacteria
CGT
Thr
>WENV170765377
LWDU01037343
274224
Alphaproteobacteria
CAT
Met
>WENV170763531
LWDU01011739
655359
Alphaproteobacteria
GAC
Val
>WENV170765416
LWDU01037434
451742
Alphaproteobacteria
GGC
Ala
>WENV170765404
LWDU01037357
655363
Alphaproteobacteria
GGT
Thr
>WENV170765361
LWDU01037301
655363
Alphaproteobacteria
GGT
Thr
>WENV170765347
LWDU01037186
274144
Alphaproteobacteria
GTG
His
>WENV170765376
LWDU01037343
274144
Alphaproteobacteria
GTG
His
>WENV170765393
LWDU01037351
455172
Alphaproteobacteria
GGC
Ala
>WENV170765359
LWDU01037256
455172
Alphaproteobacteria
GGC
Ala
>WENV170765366
LWDU01037323
273450
Alphaproteobacteria
TCT
Arg
>WENV170765386
LWDU01037346
273450
Alphaproteobacteria
TCT
Arg
>WENV170763231
LWDU01004803
274142
Alphaproteobacteria
GAT
Ile
>WENV170765394
LWDU01037351
655392
Alphaproteobacteria
GAC
Val
>WENV170763955
LWDU01025651
274138
Alphaproteobacteria
CAT
Met
>WENV170765370
LWDU01037343
274138
Alphaproteobacteria
CAT
Met
>WENV170763829
LWDU01021758
46072
Alphaproteobacteria
GCT
Ser
>WENV170766071
LWDU01040528
270799
Alphaproteobacteria
CAT
Met
>WENV170765389
LWDU01037347
454512
Alphaproteobacteria
CCA
Trp
>WENV170765354
LWDU01037229
454512
Alphaproteobacteria
CCA
Trp
>WENV170765374
LWDU01037343
455360
Alphaproteobacteria
CGC
Ala
>WENV170765342
LWDU01037171
455360
Alphaproteobacteria
CGC
Ala
>WENV170765382
LWDU01037345
655361
Alphaproteobacteria
GCC
Gly
>WENV170765338
LWDU01037159
655361
Alphaproteobacteria
GCC
Gly
>WENV170765399
LWDU01037353
274141
Alphaproteobacteria
CCT
Arg
>WENV170763653
LWDU01015418
274133
Alphaproteobacteria
ACG
Arg
>WENV170765383
LWDU01037345
780346
Alphaproteobacteria
CTG
Gln
>WENV170765352
LWDU01037206
780346
Alphaproteobacteria
CTG
Gln
>WENV170765365
LWDU01037317
281027
Alphaproteobacteria
CCT
Arg
>WENV170765408
LWDU01037369
112839
Alphaproteobacteria
CAG
Leu
>WENV170762928
LWDU01000394
780039
Alphaproteobacteria
GCA
Cys
>WENV170765390
LWDU01037347
780039
Alphaproteobacteria
GCA
Cys
>WENV170765379
LWDU01037344
180561
Alphaproteobacteria
TAG
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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