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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
19 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1004970
SRR006906.202495
279276
Bacteroidota
GAT
Ile
>SRA1004652
SRR006906.95132
279276
Bacteroidota
GAT
Ile
>SRA1004407
SRR006906.23050
279276
Bacteroidota
GAT
Ile
>SRA1004900
SRR006906.176118
670414
Bacteroidota
GGT
Thr
>SRA1004811
SRR006906.144061
88239
Bacteroidota
TGA
Ser
>SRA1004884
SRR006906.170587
281970
Bacteroidota
TGT
Thr
>SRA1004973
SRR006906.204467
667698
Bacteroidota
TTC
Glu
>SRA1004917
SRR006906.184152
458439
Bacteroidota
TTT
Lys
>SRA1004690
SRR006906.103022
458439
Bacteroidota
TTT
Lys
>SRA1004757
SRR006906.125588
240996
Bacteroidota
TGG
Pro
>SRA1004820
SRR006906.147593
72832
Bacteroidota
TAA
Leu
>SRA1004734
SRR006906.118160
72832
Bacteroidota
TAA
Leu
>SRA1004488
SRR006906.48477
285981
Bacteroidota
GAT
Ile
>SRA1005068
SRR006906.251114
460716
Bacteroidota
GAA
Phe
>SRA1004642
SRR006906.93029
460716
Bacteroidota
GAA
Phe
>SRA1004504
SRR006906.53550
460716
Bacteroidota
GAA
Phe
>SRA1004400
SRR006906.20484
460716
Bacteroidota
GAA
Phe
>SRA1004437
SRR006906.30452
241622
Bacteroidota
TAC
Val
>SRA1004899
SRR006906.176118
218695
Bacteroidota
GTA
Tyr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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