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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
78 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170024536
BCQL01071995
381459
Alphaproteobacteria
CAC
Val
>WENV170023635
BCQL01000429
365250
Alphaproteobacteria
GCC
Gly
>WENV170024606
BCQL01083462
365250
Alphaproteobacteria
GCC
Gly
>WENV170024981
BCQL01176089
365250
Alphaproteobacteria
GCC
Gly
>WENV170025184
BCQL01245244
365250
Alphaproteobacteria
GCC
Gly
>WENV170024411
BCQL01056421
419488
Alphaproteobacteria
TCC
Gly
>WENV170023911
BCQL01009450
237739
Alphaproteobacteria
CGT
Thr
>WENV170024227
BCQL01031276
435870
Alphaproteobacteria
GCA
Cys
>WENV170024387
BCQL01051925
80917
Alphaproteobacteria
CAG
Leu
>WENV170024120
BCQL01021614
113700
Alphaproteobacteria
>WENV170024443
BCQL01061844
113700
Alphaproteobacteria
>WENV170025099
BCQL01210849
113700
Alphaproteobacteria
>WENV170023815
BCQL01004992
23468
Alphaproteobacteria
GCT
Ser
>WENV170024101
BCQL01019988
23468
Alphaproteobacteria
GCT
Ser
>WENV170025186
BCQL01245823
23468
Alphaproteobacteria
GCT
Ser
>WENV170023633
BCQL01000387
176908
Alphaproteobacteria
GTC
Asp
>WENV170023634
BCQL01000387
176908
Alphaproteobacteria
GTC
Asp
>WENV170024047
BCQL01017012
176908
Alphaproteobacteria
GTC
Asp
>WENV170024096
BCQL01019554
176908
Alphaproteobacteria
GTC
Asp
>WENV170025116
BCQL01221218
176908
Alphaproteobacteria
GTC
Asp
>WENV170025377
BCQL01305856
176908
Alphaproteobacteria
GTC
Asp
>WENV170024559
BCQL01075042
148353
Alphaproteobacteria
CAT
Met
>WENV170024397
BCQL01053706
339723
Alphaproteobacteria
>WENV170023802
BCQL01004130
147083
Alphaproteobacteria
GGG
Pro
>WENV170024066
BCQL01017817
147083
Alphaproteobacteria
GGG
Pro
>WENV170024532
BCQL01071453
147083
Alphaproteobacteria
GGG
Pro
>WENV170024682
BCQL01097257
147083
Alphaproteobacteria
GGG
Pro
>WENV170025026
BCQL01186292
147083
Alphaproteobacteria
GGG
Pro
>WENV170025341
BCQL01289940
147083
Alphaproteobacteria
GGG
Pro
>WENV170023800
BCQL01003960
307050
Alphaproteobacteria
GGC
Ala
>WENV170023976
BCQL01012849
307050
Alphaproteobacteria
GGC
Ala
>WENV170024766
BCQL01120976
307050
Alphaproteobacteria
GGC
Ala
>WENV170024859
BCQL01142917
307050
Alphaproteobacteria
GGC
Ala
>WENV170024933
BCQL01164409
307050
Alphaproteobacteria
GGC
Ala
>WENV170025188
BCQL01246642
307050
Alphaproteobacteria
GGC
Ala
>WENV170023921
BCQL01009773
147879
Alphaproteobacteria
TGG
Pro
>WENV170023896
BCQL01008861
339722
Alphaproteobacteria
TTG
Gln
>WENV170024761
BCQL01119358
339722
Alphaproteobacteria
TTG
Gln
>WENV170024908
BCQL01158136
237740
Alphaproteobacteria
TTT
Lys
>WENV170024105
BCQL01020126
80918
Alphaproteobacteria
GAG
Leu
>WENV170023847
BCQL01005601
147334
Alphaproteobacteria
CAT
Met
>WENV170023994
BCQL01014011
147334
Alphaproteobacteria
CAT
Met
>WENV170024618
BCQL01085602
147334
Alphaproteobacteria
CAT
Met
>WENV170024131
BCQL01022705
413626
Alphaproteobacteria
TCC
Gly
>WENV170023880
BCQL01007506
147287
Alphaproteobacteria
TGG
Pro
>WENV170023721
BCQL01001753
148158
Alphaproteobacteria
ACG
Arg
>WENV170024860
BCQL01143194
148158
Alphaproteobacteria
ACG
Arg
>WENV170023750
BCQL01002336
28682
Alphaproteobacteria
GGA
Ser
>WENV170024422
BCQL01058033
28682
Alphaproteobacteria
GGA
Ser
>WENV170025019
BCQL01184164
28682
Alphaproteobacteria
GGA
Ser
>WENV170025066
BCQL01199986
28682
Alphaproteobacteria
GGA
Ser
>WENV170023792
BCQL01003764
340106
Alphaproteobacteria
GCC
Gly
>WENV170023765
BCQL01002768
147878
Alphaproteobacteria
CAT
Met
>WENV170023910
BCQL01009442
147878
Alphaproteobacteria
CAT
Met
>WENV170024256
BCQL01034157
167926
Alphaproteobacteria
CAT
Met
>WENV170025324
BCQL01285422
147877
Alphaproteobacteria
GTG
His
>WENV170024360
BCQL01047222
280207
Alphaproteobacteria
TGC
Ala
>WENV170024403
BCQL01054448
338760
Alphaproteobacteria
GAA
Phe
>WENV170024566
BCQL01076140
338760
Alphaproteobacteria
GAA
Phe
>WENV170024800
BCQL01130509
338760
Alphaproteobacteria
GAA
Phe
>WENV170024904
BCQL01155708
338760
Alphaproteobacteria
GAA
Phe
>WENV170024478
BCQL01066017
432316
Alphaproteobacteria
GCA
Cys
>WENV170023899
BCQL01009149
147283
Alphaproteobacteria
GTG
His
>WENV170025286
BCQL01278397
338288
Alphaproteobacteria
TTC
Glu
>WENV170023951
BCQL01010912
319925
Alphaproteobacteria
TGT
Thr
>WENV170025070
BCQL01200872
319925
Alphaproteobacteria
TGT
Thr
>WENV170024894
BCQL01151591
319925
Alphaproteobacteria
TGT
Thr
>WENV170024012
BCQL01015454
150194
Alphaproteobacteria
TCT
Arg
>WENV170023587
BCQL01000106
152248
Alphaproteobacteria
TGG
Pro
>WENV170024781
BCQL01125423
152248
Alphaproteobacteria
TGG
Pro
>WENV170024686
BCQL01098535
339606
Alphaproteobacteria
>WENV170024798
BCQL01130254
339606
Alphaproteobacteria
>WENV170024374
BCQL01049266
377327
Alphaproteobacteria
GCC
Gly
>WENV170023712
BCQL01001572
127020
Alphaproteobacteria
TCT
Arg
>WENV170024425
BCQL01059329
236256
Alphaproteobacteria
TAC
Val
>WENV170024702
BCQL01102207
236256
Alphaproteobacteria
TAC
Val
>WENV170024773
BCQL01122546
236256
Alphaproteobacteria
TAC
Val
>WENV170025285
BCQL01278392
236256
Alphaproteobacteria
TAC
Val
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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