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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV181385312
OFRI01063794
165036
Gammaproteobacteria
CCA
Trp
>WENV181384752
OFRI01008521
279763
Gammaproteobacteria
TGT
Thr
>WENV181384979
OFRI01024202
347865
Gammaproteobacteria
>WENV181385275
OFRI01056038
412505
Gammaproteobacteria
GCA
Cys
>WENV181384575
OFRI01003023
2129
Gammaproteobacteria
>WENV181384390
OFRI01000562
144979
Gammaproteobacteria
CGG
Pro
>WENV181384426
OFRI01000903
162709
Gammaproteobacteria
CCT
Arg
>WENV181384781
OFRI01010027
2169
Gammaproteobacteria
>WENV181384415
OFRI01000830
145335
Gammaproteobacteria
GGG
Pro
>WENV181385149
OFRI01041581
249150
Gammaproteobacteria
TAC
Val
>WENV181385508
OFRI01105587
277276
Gammaproteobacteria
CTC
Glu
>WENV181384503
OFRI01001904
44927
Gammaproteobacteria
TGA
Ser
>WENV181384571
OFRI01002909
24428
Gammaproteobacteria
GGA
Ser
>WENV181384349
OFRI01000261
152286
Gammaproteobacteria
GAC
Val
>WENV181385150
OFRI01041766
179150
Gammaproteobacteria
CAT
Met
>WENV181385093
OFRI01033320
411785
Gammaproteobacteria
CCC
Gly
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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