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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003706
SRR002327.135576
45127
Betaproteobacteria
CGA
Ser
>SRA1003683
SRR002327.119536
267868
Betaproteobacteria
GTG
His
>SRA1003848
SRR002327.232741
267868
Betaproteobacteria
GTG
His
>SRA1003720
SRR002327.144374
352197
Betaproteobacteria
GGT
Thr
>SRA1003731
SRR002327.148110
352197
Betaproteobacteria
GGT
Thr
>SRA1003736
SRR002327.151820
352197
Betaproteobacteria
GGT
Thr
>SRA1003772
SRR002327.174806
352197
Betaproteobacteria
GGT
Thr
>SRA1003821
SRR002327.209650
267870
Betaproteobacteria
TTC
Glu
>SRA1003599
SRR002327.59901
267882
Betaproteobacteria
TGC
Ala
>SRA1003662
SRR002327.102830
267882
Betaproteobacteria
TGC
Ala
>SRA1003852
SRR002327.234449
267882
Betaproteobacteria
TGC
Ala
>SRA1003778
SRR002327.180594
412588
Betaproteobacteria
GCA
Cys
>SRA1003614
SRR002327.68507
152292
Betaproteobacteria
TTG
Gln
>SRA1003600
SRR002327.60749
283971
Betaproteobacteria
TAC
Val
>SRA1003602
SRR002327.62690
145694
Betaproteobacteria
ACG
Arg
>SRA1003643
SRR002327.87127
145694
Betaproteobacteria
ACG
Arg
>SRA1003728
SRR002327.146921
145694
Betaproteobacteria
ACG
Arg
>SRA1003835
SRR002327.219092
145694
Betaproteobacteria
ACG
Arg
>SRA1003630
SRR002327.76046
154789
Betaproteobacteria
CAT
Met
>SRA1003610
SRR002327.67645
182616
Betaproteobacteria
CAT
Met
>SRA1003733
SRR002327.150608
239140
Betaproteobacteria
TTT
Lys
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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