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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1015527
SRR023846.98259
148131
Bacteroidota
GTT
Asn
>SRA1015776
SRR023846.194360
340138
Bacteroidota
GGT
Thr
>SRA1015362
SRR023846.30183
188343
Bacteroidota
TGC
Ala
>SRA1015361
SRR023846.30183
199734
Bacteroidota
GAT
Ile
>SRA1016359
SRR023846.464443
199734
Bacteroidota
GAT
Ile
>SRA1016451
SRR023846.503935
148127
Bacteroidota
GTG
His
>SRA1015387
SRR023846.39253
148125
Bacteroidota
GGG
Pro
>SRA1015927
SRR023846.266341
148125
Bacteroidota
GGG
Pro
>SRA1015759
SRR023846.184664
145315
Bacteroidota
CAT
Met
>SRA1016347
SRR023846.460949
238849
Bacteroidota
TTG
Gln
>SRA1016353
SRR023846.461497
238849
Bacteroidota
TTG
Gln
>SRA1016416
SRR023846.487627
238849
Bacteroidota
TTG
Gln
>SRA1015373
SRR023846.34156
126671
Bacteroidota
GAC
Val
>SRA1016280
SRR023846.433817
238847
Bacteroidota
GCC
Gly
>SRA1016547
SRR023846.558063
238847
Bacteroidota
GCC
Gly
>SRA1015379
SRR023846.36560
238846
Bacteroidota
CCC
Gly
>SRA1016311
SRR023846.444410
338467
Bacteroidota
CCG
Arg
>SRA1016126
SRR023846.357313
23418
Bacteroidota
CGA
Ser
>SRA1016461
SRR023846.511042
256304
Bacteroidota
TTT
Lys
>SRA1015814
SRR023846.209564
338466
Bacteroidota
TTC
Glu
>SRA1015852
SRR023846.228181
338466
Bacteroidota
TTC
Glu
>SRA1015624
SRR023846.136954
235746
Bacteroidota
GAA
Phe
>SRA1016055
SRR023846.326670
235746
Bacteroidota
GAA
Phe
>SRA1015608
SRR023846.131183
96152
Bacteroidota
GAG
Leu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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