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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170755195
LUMM01025282
281908
Gammaproteobacteria
GTG
His
>WENV170754812
LUMM01001360
328691
Gammaproteobacteria
GGT
Thr
>WENV170755161
LUMM01020404
20618
Gammaproteobacteria
GGA
Ser
>WENV170754995
LUMM01008344
74240
Gammaproteobacteria
CAA
Leu
>WENV170754833
LUMM01001956
280912
Gammaproteobacteria
TGC
Ala
>WENV170755054
LUMM01011894
178471
Gammaproteobacteria
GTT
Asn
>WENV170755089
LUMM01014538
176545
Gammaproteobacteria
CAT
Met
>WENV170755078
LUMM01013517
401684
Gammaproteobacteria
CCT
Arg
>WENV170755225
LUMM01029645
232119
Gammaproteobacteria
ACG
Arg
>WENV170754990
LUMM01008164
180678
Gammaproteobacteria
CCG
Arg
>WENV170754894
LUMM01003876
285547
Gammaproteobacteria
TTG
Gln
>WENV170754975
LUMM01007143
285547
Gammaproteobacteria
TTG
Gln
>WENV170755197
LUMM01025282
180681
Gammaproteobacteria
TGG
Pro
>WENV170754893
LUMM01003876
118640
Gammaproteobacteria
TAG
Leu
>WENV170755196
LUMM01025282
118640
Gammaproteobacteria
TAG
Leu
>WENV170754962
LUMM01006529
180679
Gammaproteobacteria
CCA
Trp
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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