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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11992 (18 seq.)
>W141083753
AUQC01000015
Gammaproteobacteria
Escherichia coli O104:H21 str. CFSAN002236 [AUQC]
435
344
-
Ser
GCT
[ENA]
¡û
>W141227208
BAKV01000004
Gammaproteobacteria
Escherichia coli JCM 20135 [BAKV]
310235
310326
+
Ser
GCT
[ENA]
¡û
>C181215459
LS483469
Gammaproteobacteria
Serratia plymuthica NCTC12961 [LS483469]
820280
820371
+
Ser
GCT
-
¡û
>W1911019126
NLNO01000061
Gammaproteobacteria
Escherichia coli MOD1-EC5502 [NLNO]
7732
7823
+
Ser
GCT
[ENA]
¡û
>W1911020758
NLOP01000019
Gammaproteobacteria
Escherichia coli MOD1-EC5472 [NLOP]
7800
7891
+
Ser
GCT
[ENA]
¡û
>W1911021564
NLPC01000008
Gammaproteobacteria
Escherichia coli MOD1-EC5454 [NLPC]
121779
121870
+
Ser
GCT
[ENA]
¡û
>W1911021841
NLPH01000006
Gammaproteobacteria
Escherichia coli MOD1-EC5446 [NLPH]
46705
46614
-
Cys
GCA
[ENA]
¡û
>W1911021892
NLPI01000017
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
125691
125782
+
Ser
GCT
[ENA]
¡û
>W1911022037
NLPM01000006
Gammaproteobacteria
Escherichia coli MOD1-EC5440 [NLPM]
287
196
-
Ser
GCT
[ENA]
¡û
>SRA1005045
SRR006906.238523
metagenomic water samples (SRP000427)
123
214
+
Ser
GCT
[SRA]
>W2011827051
UGJR01000005
Gammaproteobacteria
Klebsiella oxytoca NCTC11694 [UGJR]
86218
86309
+
Ser
GCT
[ENA]
¡û
>C201154684
CP045190
Gammaproteobacteria
Escherichia coli NT1F31 [CP045190]
1121291
1121382
+
Ser
GCT
-
¡û
>C201306406
LR025083
Gammaproteobacteria
Serratia symbiotica SeCistrobi [LR025083]
451466
451557
+
Ser
GCT
-
¡û
>C211321142
CP073338
Gammaproteobacteria
Salmonella enterica subsp. enterica B35 [CP073338]
3588838
3588929
+
Undet
NNN
-
¡û
>W1511488683
JWSO01000016
Gammaproteobacteria
Escherichia coli E16 [JWSO]
209146
209055
-
Ser
GCT
[ENA]
¡û
>C161027864
CP010512
Gammaproteobacteria
Enterobacter cloacae colR/S [CP010512]
2183087
2183178
+
Ser
GCT
-
¡û
>W1610547974
JWKB01000010
Gammaproteobacteria
Escherichia coli [JWKB]
59483
59574
+
Ser
GCT
[ENA]
¡û
>W1710651350
JWKB01000010
Gammaproteobacteria
Escherichia coli [JWKB]
59483
59574
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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