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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123294 (28 seq.)
>A171000102
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1190856
1190932
+
Arg
TCG
-
¡û
>A171000912
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1564382
1564457
+
Arg
TCG
-
¡û
>A171002018
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
133133
133209
+
Arg
TCG
-
¡û
>A171002255
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2463840
2463764
-
Arg
TCG
-
¡û
>A171003997
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2396097
2396020
-
Arg
TCG
-
¡û
>A171007323
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1945945
1945868
-
Arg
TCG
-
¡û
>A171007372
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1247740
1247663
-
Arg
TCG
-
¡û
>A171007406
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2406971
2406894
-
Arg
TCG
-
¡û
>A171007714
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1575501
1575576
+
Arg
TCG
-
¡û
>WENV181230040
OFEK01000212
[OFEK] activated sludge metagenome; Anaerobic digester
1528
1452
-
Arg
TCG
[ENA]
¢þ
>WENV170021394
BBPF01008228
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1739
1663
-
Arg
TCG
[ENA]
¢þ
>At1665
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1208313
1208388
+
Arg
TCG
[Ensembl]
¡û
>WENV170645754
JPYU01038345
[JPYU] wastewater metagenome; domestic wastewater sediment without any treatment
162
240
+
Arg
TCG
[ENA]
¢þ
>WENV170651534
JRYF01055263
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
223
145
-
Arg
TCG
[ENA]
¢þ
>WENV170672019
LAHU01272838
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
747
825
+
Arg
TCG
[ENA]
¢þ
>WENV170676684
LDZS01001901
[LDZS] terrestrial metagenome; oil reservoir sample K3
24969
24893
-
Arg
TCG
[ENA]
¢þ
>WENV170677330
LDZT01004987
[LDZT] terrestrial metagenome; oil reservoir sample SB1
861
784
-
Arg
TCG
[ENA]
¢þ
>WENV170688417
LFRM01243955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1874
1799
-
Arg
TCG
[ENA]
¢þ
>WENV170720226
LSQX01145279
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1312
1237
-
Arg
TCG
[ENA]
¢þ
>WENV170972242
MTKX01024217
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
429
507
+
Arg
TCG
[ENA]
¢þ
>WENV170975573
MTKZ01001330
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
33476
33398
-
Arg
TCG
[ENA]
¢þ
>W1910575104
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2323752
2323676
-
Arg
TCG
[ENA]
¡û
>W1911722804
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
46733
46657
-
Arg
TCG
[ENA]
¡û
>W1610006228
AMGN01000014
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13285
13208
-
Arg
TCG
[ENA]
¡û
>W1610011003
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
258475
258397
-
Arg
TCG
[ENA]
¡û
>W1610049134
BBES01000001
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
233496
233419
-
Arg
TCG
[ENA]
¡û
>W1610613884
LGGL01000094
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
861
784
-
Arg
TCG
[ENA]
¡û
>W1610990672
LWMT01000077
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
3927
3850
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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