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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147026 (12 seq.)
>WENV183707509
PDWI01008751
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15614
15537
-
Pro
CGG
[ENA]
¡û
>WENV183714104
PDWI01168238
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
398
475
+
Pro
CGG
[ENA]
¡û
>WENV183721535
PDWJ01074030
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
109
186
+
Pro
CGG
[ENA]
¡û
>WENV183721819
PDWJ01089212
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
109
186
+
Pro
CGG
[ENA]
¡û
>WENV170006146
AMWB02002585
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
3003
3080
+
Pro
CGG
[ENA]
¡û
>WENV170174676
CEOQ01298160
[CEOQ] marine metagenome genome assembly TARA_034_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
75785
75708
-
Pro
CGG
[ENA]
¡û
>WENV170639935
JFJP01011100
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
33368
33291
-
Pro
CGG
[ENA]
¡û
>WENV170671608
LAHU01103757
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
227
304
+
Pro
CGG
[ENA]
¡û
>WENV170773367
LXNJ01004684
[LXNJ] sponge metagenome; marine sponge reef
3633
3711
+
Pro
CGG
[ENA]
¡û
>WENV170773854
LXNJ01014813
[LXNJ] sponge metagenome; marine sponge reef
2760
2682
-
Pro
CGG
[ENA]
¡û
>WENV170906645
MDTE01041525
[MDTE] marine metagenome; seawater
538716
538793
+
Pro
CGG
[ENA]
¡û
>WENV170958834
MKWU01002154
[MKWU] sponge metagenome;
8028
8106
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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