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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147810 (119 seq.)
>A171001430
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
362908
362983
+
Lys
CTT
-
¡û
>A171001722
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
2119802
2119877
+
Lys
CTT
-
¡û
>A171003602
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
1395272
1395198
-
Lys
CTT
-
¡û
>A171004364
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
4451367
4451441
+
Lys
CTT
-
¡û
>A171004533
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2271352
2271278
-
Lys
CTT
-
¡û
>A171004583
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1770868
1770942
+
Lys
CTT
-
¡û
>A171004633
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
4084521
4084595
+
Lys
CTT
-
¡û
>A171004683
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3856682
3856756
+
Lys
CTT
-
¡û
>A171004738
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
4153191
4153265
+
Lys
CTT
-
¡û
>A171004791
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4972503
4972429
-
Lys
CTT
-
¡û
>A171004844
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4895966
4895892
-
Lys
CTT
-
¡û
>A171004901
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
5380134
5380060
-
Lys
CTT
-
¡û
>A171004950
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
4036359
4036433
+
Lys
CTT
-
¡û
>A171005000
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
4009175
4009249
+
Lys
CTT
-
¡û
>A171005052
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
4089725
4089799
+
Lys
CTT
-
¡û
>A171005106
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
4094590
4094664
+
Lys
CTT
-
¡û
>A171005158
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
4078919
4078845
-
Lys
CTT
-
¡û
>A171005217
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
4015656
4015581
-
Lys
CTT
-
¡û
>A171005261
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
4968033
4968107
+
Lys
CTT
-
¡û
>A171005320
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
4513241
4513315
+
Lys
CTT
-
¡û
>A171005420
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
4424411
4424337
-
Lys
CTT
-
¡û
>A171005475
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
4417002
4416928
-
Lys
CTT
-
¡û
>A171005528
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4814595
4814669
+
Lys
CTT
-
¡û
>A171005585
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
4484230
4484304
+
Lys
CTT
-
¡û
>A171005634
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
4399921
4399995
+
Lys
CTT
-
¡û
>A171006822
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
358246
358171
-
Lys
CTT
-
¡û
>WENV180037136
FVAA010653128
[FVAA] soil metagenome; Soil
90
16
-
Lys
CTT
[ENA]
¢þ
>WENV180345445
OBLN01000133
[OBLN] sediment metagenome; sediment
3284
3210
-
Lys
CTT
[ENA]
¢þ
>WENV170008242
AMZC01005706
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1849
1773
-
Lys
CTT
[ENA]
¢þ
>At1403
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
67852
67779
-
Lys
CTT
[Ensembl]
¡û
>At1477
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1250537
1250464
-
Lys
CTT
[Ensembl]
¡û
>At1538
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
1623627
1623554
-
Lys
CTT
[Ensembl]
¡û
>WENV170564096
CZCB01049782
[CZCB] anaerobic digester metagenome; anaerobic digester
564
640
+
Lys
CTT
[ENA]
¢þ
>WENV170690957
LFRM01372925
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
133534
133610
+
Lys
CTT
[ENA]
¢þ
>WENV170720143
LSQX01142873
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2037
1963
-
Lys
CTT
[ENA]
¢þ
>WENV170724159
LSQX01295456
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7002
6926
-
Lys
CTT
[ENA]
¢þ
>WENV170784217
MCHG01000134
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
9480
9556
+
Lys
CTT
[ENA]
¢þ
>W1910228307
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
172466
172391
-
Lys
CTT
[ENA]
¡û
>W1910230902
FPAO01000005
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
83013
82939
-
Lys
CTT
[ENA]
¡û
>W1910471797
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
700275
700200
-
Lys
CTT
[ENA]
¡û
>W1910569240
JJOR01000074
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
58719
58793
+
Lys
CTT
[ENA]
¡û
>W1910569272
JJOS01000004
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
88876
88950
+
Lys
CTT
[ENA]
¡û
>W1910569374
JJOT01000116
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
32982
32908
-
Lys
CTT
[ENA]
¡û
>W1910569397
JJOU01000090
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
34808
34882
+
Lys
CTT
[ENA]
¡û
>W1910569431
JJOV01000004
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
41914
41840
-
Lys
CTT
[ENA]
¡û
>W1910569508
JJOW01000208
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
3266
3192
-
Lys
CTT
[ENA]
¡û
>W1910569538
JJOX01000031
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
55872
55946
+
Lys
CTT
[ENA]
¡û
>W1910569611
JJOY01000042
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
55850
55924
+
Lys
CTT
[ENA]
¡û
>W1910569677
JJOZ01000061
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
55772
55846
+
Lys
CTT
[ENA]
¡û
>W1910569711
JJPA01000162
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
56744
56818
+
Lys
CTT
[ENA]
¡û
>W1910569737
JJPB01000012
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
5843
5769
-
Lys
CTT
[ENA]
¡û
>W1910569812
JJPC01000064
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
55339
55413
+
Lys
CTT
[ENA]
¡û
>W1910569852
JJPD01000093
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
88700
88626
-
Lys
CTT
[ENA]
¡û
>W1910569938
JJPE01000175
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910569967
JJPF01000067
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910570038
JJPG01000155
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910570085
JJPH01000129
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910570117
JJPI01000069
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
20168
20242
+
Lys
CTT
[ENA]
¡û
>W1910570162
JJPJ01000051
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
20168
20242
+
Lys
CTT
[ENA]
¡û
>W1910570239
JJPK01000116
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
20168
20242
+
Lys
CTT
[ENA]
¡û
>W1910570244
JJPL01000012
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
92860
92786
-
Lys
CTT
[ENA]
¡û
>W1910570303
JJPM01000053
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
44404
44478
+
Lys
CTT
[ENA]
¡û
>W1910570372
JJPN01000097
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910570414
JJPO01000056
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
30798
30872
+
Lys
CTT
[ENA]
¡û
>W1910570474
JJPP01000090
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
36653
36727
+
Lys
CTT
[ENA]
¡û
>W1910570503
JJPQ01000018
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
34774
34848
+
Lys
CTT
[ENA]
¡û
>W1910570597
JJPR01000147
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
36257
36331
+
Lys
CTT
[ENA]
¡û
>W1910570612
JJPS01000073
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
19515
19589
+
Lys
CTT
[ENA]
¡û
>W1910570649
JJPT01000007
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
32952
33026
+
Lys
CTT
[ENA]
¡û
>W1910570743
JJPU01000189
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
20172
20246
+
Lys
CTT
[ENA]
¡û
>W1910570797
JJPV01000136
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
20171
20245
+
Lys
CTT
[ENA]
¡û
>W1910570846
JJPW01000111
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
20168
20242
+
Lys
CTT
[ENA]
¡û
>W1910570881
JJPX01000101
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
36257
36331
+
Lys
CTT
[ENA]
¡û
>W1910570933
JJPY01000072
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
34832
34906
+
Lys
CTT
[ENA]
¡û
>W1910570968
JJPZ01000033
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910571006
JJQA01000012
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
30746
30820
+
Lys
CTT
[ENA]
¡û
>W1910571072
JJQB01000048
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
30752
30826
+
Lys
CTT
[ENA]
¡û
>W1910571133
JJQC01000108
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
30746
30820
+
Lys
CTT
[ENA]
¡û
>W1910571199
JJQD01000217
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
23374
23448
+
Lys
CTT
[ENA]
¡û
>W1910571223
JJQE01000095
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
34825
34899
+
Lys
CTT
[ENA]
¡û
>W1910571270
JJQF01000044
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
36196
36270
+
Lys
CTT
[ENA]
¡û
>W1910571338
JJQG01000120
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
58719
58793
+
Lys
CTT
[ENA]
¡û
>W1910571386
JJQH01000137
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
4445
4371
-
Lys
CTT
[ENA]
¡û
>W1910571436
JJQI01000072
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
89857
89931
+
Lys
CTT
[ENA]
¡û
>W1910571480
JJQJ01000133
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
23299
23373
+
Lys
CTT
[ENA]
¡û
>W1910571561
JJQK01000282
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
32241
32315
+
Lys
CTT
[ENA]
¡û
>W1910571575
JJQL01000016
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
31833
31759
-
Lys
CTT
[ENA]
¡û
>W1910571619
JJQM01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
58719
58793
+
Lys
CTT
[ENA]
¡û
>W1910571696
JJQN01000059
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
32242
32316
+
Lys
CTT
[ENA]
¡û
>W1910571780
JJQO01000323
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
58655
58729
+
Lys
CTT
[ENA]
¡û
>W1910571830
JJQP01000213
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
206
280
+
Lys
CTT
[ENA]
¡û
>W1910571899
JJQQ01000175
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
37450
37376
-
Lys
CTT
[ENA]
¡û
>W1910571918
JJQR01000047
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
58719
58793
+
Lys
CTT
[ENA]
¡û
>W1910571957
JJQS01000025
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910572000
JJQT01000004
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910572101
JJQU01000258
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
34643
34717
+
Lys
CTT
[ENA]
¡û
>W1910572149
JJQV01000144
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910572158
JJQW01000014
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
58737
58811
+
Lys
CTT
[ENA]
¡û
>W1910572217
JJQX01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
12222
12296
+
Lys
CTT
[ENA]
¡û
>W1910572262
JJQY01000055
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
18649
18723
+
Lys
CTT
[ENA]
¡û
>W1910572295
JJQZ01000006
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910572379
JJRA01000095
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910572415
JJRB01000050
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
3265
3191
-
Lys
CTT
[ENA]
¡û
>W1910575074
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
949749
949675
-
Lys
CTT
[ENA]
¡û
>W1910582966
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
309693
309768
+
Lys
CTT
[ENA]
¡û
>W1910635231
LMVP01000002
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
20334
20260
-
Lys
CTT
[ENA]
¡û
>W1910655381
LZPK01000093
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
3254
3180
-
Lys
CTT
[ENA]
¡û
>W1910672539
MCNQ01000004
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
161196
161121
-
Lys
CTT
[ENA]
¡û
>W1910694764
MDTP02000004
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
9481
9555
+
Lys
CTT
[ENA]
¡û
>W1911492128
OBDR01000003
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
150984
150909
-
Lys
CTT
[ENA]
¡û
>W1911633752
PVBU01000003
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
61462
61537
+
Lys
CTT
[ENA]
¡û
>W1911653218
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
761516
761441
-
Lys
CTT
[ENA]
¡û
>W1610000025
AAAR03000005
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
129201
129277
+
Lys
CTT
[ENA]
¡û
>W1610046877
BBCW01000003
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
101583
101659
+
Lys
CTT
[ENA]
¡û
>W1610048612
BBEF01000053
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
5344
5420
+
Lys
CTT
[ENA]
¡û
>W1610605122
LFRP01000044
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
133534
133610
+
Lys
CTT
[ENA]
¡û
>W1610670258
LKAZ01000048
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
101038
101114
+
Lys
CTT
[ENA]
¡û
>W1610919883
LSRU01000122
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
368
444
+
Lys
CTT
[ENA]
¡û
>W1611052491
MAFX01000008
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
36968
37044
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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