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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151040 (42 seq.)
>W1710926825
LOER01000046
Bacillota
Desulfitibacter sp. BRH_c19 [LOER]
134943
134867
-
Asp
GTC
[ENA]
¡û
>W1711259330
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13829
13753
-
Asp
GTC
[ENA]
¡û
>W131160363
AQWN01000002
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
45392
45316
-
Asp
GTC
[ENA]
¡û
>W131237163
AUMW01000028
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
3644
3568
-
Asp
GTC
[ENA]
¡û
>WENV170562577
CZCB01003685
[CZCB] anaerobic digester metagenome; anaerobic digester
5293
5369
+
Asp
GTC
[ENA]
¢þ
>WENV170675847
LDZQ01001118
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1229
1305
+
Asp
GTC
[ENA]
¢þ
>WENV170676351
LDZR01002338
[LDZR] terrestrial metagenome; oil reservoir sample K2
29704
29628
-
Asp
GTC
[ENA]
¢þ
>WENV170685225
LFRM01079301
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2332
2408
+
Asp
GTC
[ENA]
¢þ
>WENV170686984
LFRM01171688
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9205
9129
-
Asp
GTC
[ENA]
¢þ
>WENV170689205
LFRM01282955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9865
9941
+
Asp
GTC
[ENA]
¢þ
>WENV170716466
LSQX01000245
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
190
114
-
Asp
GTC
[ENA]
¢þ
>WENV170718394
LSQX01074205
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6347
6423
+
Asp
GTC
[ENA]
¢þ
>WENV170968985
MTKW01018245
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2301
2225
-
Asp
GTC
[ENA]
¢þ
>C181058740
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
839951
840027
+
Asp
GTC
-
¡û
>C181058756
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
1349672
1349748
+
Asp
GTC
-
¡û
>W141558263
JHVU01000001
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
28850
28926
+
Asp
GTC
[ENA]
¡û
>W141558281
JHVU01000007
Bacillota
Desulfitibacter alkalitolerans DSM 16504 [JHVU]
191493
191569
+
Asp
GTC
[ENA]
¡û
>W141702102
JMLG01000003
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
168390
168314
-
Asp
GTC
[ENA]
¡û
>W09108834
ABTQ01000010
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
18141
18217
+
Asp
GTC
[ENA]
¡û
>W09108863
ABTQ01000059
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
10247
10171
-
Asp
GTC
[ENA]
¡û
>C10104807
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1422058
1422134
+
Asp
GTC
[Ensembl]
¡û
>C10104817
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1917599
1917675
+
Asp
GTC
[Ensembl]
¡û
>C10104833
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3765802
3765726
-
Asp
GTC
[Ensembl]
¡û
>C11107088
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
1088050
1088126
+
Asp
GTC
[Ensembl]
¡û
>W1610073859
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85304
85380
+
Asp
GTC
[ENA]
¡û
>W1610073904
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9740
9664
-
Asp
GTC
[ENA]
¡û
>W1610073923
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
421
345
-
Asp
GTC
[ENA]
¡û
>W1610607060
LFTO01000099
Bacillota
Clostridiales bacterium DTU086 [LFTO]
9205
9129
-
Asp
GTC
[ENA]
¡û
>W1610607069
LFTO01000162
Bacillota
Clostridiales bacterium DTU086 [LFTO]
9865
9941
+
Asp
GTC
[ENA]
¡û
>W1610612693
LGEZ01000010
Bacillota
Clostridia bacterium 41_269 [LGEZ]
29704
29628
-
Asp
GTC
[ENA]
¡û
>W1610784367
LOER01000046
Bacillota
Desulfitibacter sp. BRH_c19 [LOER]
134943
134867
-
Asp
GTC
[ENA]
¡û
>W1611021419
LYVF01000127
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
13829
13753
-
Asp
GTC
[ENA]
¡û
>W1710070977
BCWE01000004
Bacillota
Desulfolucanica intricata intricatum [BCWE]
85304
85380
+
Asp
GTC
[ENA]
¡û
>W1710071022
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
9740
9664
-
Asp
GTC
[ENA]
¡û
>W1710071041
BCWE01000066
Bacillota
Desulfolucanica intricata intricatum [BCWE]
421
345
-
Asp
GTC
[ENA]
¡û
>W1710574774
FOYM01000001
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
274465
274389
-
Asp
GTC
[ENA]
¡û
>W1710574778
FOYM01000001
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
266995
266919
-
Asp
GTC
[ENA]
¡û
>W1710583551
FQUW01000054
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
9752
9828
+
Asp
GTC
[ENA]
¡û
>W1710588586
FQZM01000047
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
15569
15645
+
Asp
GTC
[ENA]
¡û
>W1710728347
LFTO01000099
Bacillota
Clostridiales bacterium DTU086 [LFTO]
9205
9129
-
Asp
GTC
[ENA]
¡û
>W1710728356
LFTO01000162
Bacillota
Clostridiales bacterium DTU086 [LFTO]
9865
9941
+
Asp
GTC
[ENA]
¡û
>W1710734014
LGEZ01000010
Bacillota
Clostridia bacterium 41_269 [LGEZ]
29704
29628
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK