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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151978 (33 seq.)
>A171000880
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
457934
457858
-
Pro
GGG
-
¡û
>A171001023
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1635723
1635647
-
Pro
GGG
-
¡û
>A171001284
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
70778
70702
-
Pro
GGG
-
¡û
>A171001503
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
627619
627543
-
Pro
GGG
-
¡û
>A171004483
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1571276
1571200
-
Pro
GGG
-
¡û
>WENV180275302
OBHT01002221
[OBHT] metagenome; hydrothermal vent
788
712
-
Pro
GGG
[ENA]
¢þ
>WENV180288049
OBIL01038580
[OBIL] metagenome; hydrothermal vent
103
27
-
Pro
GGG
[ENA]
¢þ
>WENV180317306
OBKJ01106450
[OBKJ] metagenome; hydrothermal vent
73
-1
-
Pro
GGG
[ENA]
¢þ
>WENV180332612
OBLD01064210
[OBLD] metagenome; water
51
127
+
Pro
GGG
[ENA]
¢þ
>WENV181206774
OFAW01005552
[OFAW] metagenome; hydrothermal vent
243
319
+
Pro
GGG
[ENA]
¢þ
>WENV181207160
OFAY01002271
[OFAY] metagenome; hydrothermal vent
1211
1135
-
Pro
GGG
[ENA]
¢þ
>WENV181207649
OFAZ01009835
[OFAZ] metagenome; hydrothermal vent
295
371
+
Pro
GGG
[ENA]
¢þ
>WENV181207955
OFBA01004602
[OFBA] metagenome; hydrothermal vent
461
385
-
Pro
GGG
[ENA]
¢þ
>WENV181207982
OFBA01005965
[OFBA] metagenome; hydrothermal vent
744
668
-
Pro
GGG
[ENA]
¢þ
>WENV181208360
OFBB01005386
[OFBB] metagenome; hydrothermal vent
85
161
+
Pro
GGG
[ENA]
¢þ
>WENV181208804
OFBC01008385
[OFBC] metagenome; hydrothermal vent
783
707
-
Pro
GGG
[ENA]
¢þ
>WENV181213011
OFBU01004055
[OFBU] metagenome; hydrothermal vent
973
897
-
Pro
GGG
[ENA]
¢þ
>WENV181213556
OFBV01008510
[OFBV] metagenome; hydrothermal vent
598
522
-
Pro
GGG
[ENA]
¢þ
>WENV181213857
OFBW01001177
[OFBW] metagenome; hydrothermal vent
1330
1254
-
Pro
GGG
[ENA]
¢þ
>WENV181214455
OFBY01000301
[OFBY] metagenome; hydrothermal vent
5467
5543
+
Pro
GGG
[ENA]
¢þ
>WENV181215167
OFBZ01005898
[OFBZ] metagenome; hydrothermal vent
479
555
+
Pro
GGG
[ENA]
¢þ
>WENV181215520
OFCA01001562
[OFCA] metagenome; hydrothermal vent
2072
1996
-
Pro
GGG
[ENA]
¢þ
>WENV181215995
OFCB01001088
[OFCB] metagenome; hydrothermal vent
532
456
-
Pro
GGG
[ENA]
¢þ
>WENV181223875
OFDD01002263
[OFDD] metagenome; hydrothermal vent
359
283
-
Pro
GGG
[ENA]
¢þ
>WENV181224719
OFDG01001998
[OFDG] metagenome; hydrothermal vent
1333
1409
+
Pro
GGG
[ENA]
¢þ
>WENV181225424
OFDI01001296
[OFDI] metagenome; hydrothermal vent
2251
2327
+
Pro
GGG
[ENA]
¢þ
>At0923
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
190832
190908
+
Pro
GGG
[Ensembl]
¡û
>W1610001115
ACQW01000004
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
60750
60674
-
Pro
GGG
[ENA]
¡û
>W1610001140
ACQY01000004
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
22003
21927
-
Pro
GGG
[ENA]
¡û
>W1610001542
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
583773
583849
+
Pro
GGG
[ENA]
¡û
>W1610001623
ADCA01000001
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
28901
28977
+
Pro
GGG
[ENA]
¡û
>W1610018101
APMM01000031
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
27482
27558
+
Pro
GGG
[ENA]
¡û
>W1610018657
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
427984
427908
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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