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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153159 (57 seq.)
>W1710863184
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1319370
1319446
+
Pro
CGG
[ENA]
¡û
>W1710865671
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1398850
1398926
+
Pro
CGG
[ENA]
¡û
>W1710880618
LMSL01000039
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
25045
25121
+
Pro
CGG
[ENA]
¡û
>W1711751289
MUNQ01000007
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
216374
216450
+
Pro
CGG
[ENA]
¡û
>W1711751360
MUNR01000012
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
488083
488159
+
Pro
CGG
[ENA]
¡û
>W1711751446
MUNT01000006
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
736658
736734
+
Pro
CGG
[ENA]
¡û
>W1711751482
MUNU01000011
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
59656
59580
-
Pro
CGG
[ENA]
¡û
>W1711751531
MUNV01000011
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
69197
69121
-
Pro
CGG
[ENA]
¡û
>W131046191
AMSF01000037
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
81195
81271
+
Pro
CGG
[ENA]
¡û
>W131215569
ATVD01000001
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 [ATVD]
135302
135378
+
Pro
CGG
[ENA]
¡û
>C171063389
CP017480
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 LJ96 [CP017480]
3085886
3085810
-
Pro
CGG
-
¡û
>WENV180017621
FSXK01001532
[FSXK] metagenome; soil
614
690
+
Pro
CGG
[ENA]
¢þ
>WENV180019172
FTBI01001159
[FTBI] metagenome; soil
268
344
+
Pro
CGG
[ENA]
¢þ
>WENV180035983
FTLB01089490
[FTLB] metagenome; soil
221
297
+
Pro
CGG
[ENA]
¢þ
>WENV180254394
OBEQ010626827
[OBEQ] groundwater metagenome; groundwater
497
421
-
Pro
CGG
[ENA]
¢þ
>W141094264
AVCI01000045
Gammaproteobacteria
Arenimonas oryziterrae DSM 21050 = YC6267 [AVCI]
135386
135462
+
Pro
CGG
[ENA]
¡û
>WENV181401841
OFTX01010025
[OFTX] sludge metagenome; sludge
1304
1380
+
Pro
CGG
[ENA]
¢þ
>WENV183697557
OUNK010001196
[OUNK] metagenome; soil
2331
2407
+
Pro
CGG
[ENA]
¢þ
>C191186043
CP041046
Gammaproteobacteria
Luteibacter pinisoli MAH-14 [CP041046]
1495661
1495585
-
Pro
CGG
-
¡û
>W141820724
JQNB01000001
Gammaproteobacteria
Luteibacter sp. 9135 [JQNB]
2443569
2443493
-
Pro
CGG
[ENA]
¡û
>W141820803
JQND01000001
Gammaproteobacteria
Luteibacter sp. 9145 [JQND]
3096250
3096326
+
Pro
CGG
[ENA]
¡û
>W141821272
JQNL01000001
Gammaproteobacteria
Luteibacter sp. 9143a 9143 [JQNL]
3830628
3830552
-
Pro
CGG
[ENA]
¡û
>W1910729320
MGYJ01000078
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_22 [MGYJ]
170069
169993
-
Pro
CGG
[ENA]
¡û
>SRA1001893
SRR001308.112936
Metagenomic characterization of a wastewater treatment plant (SRP000180)
177
253
+
Pro
CGG
[SRA]
>W1810477566
QAOX01000004
Gammaproteobacteria
Luteibacter sp. OK325 [QAOX]
308442
308518
+
Pro
CGG
[ENA]
¡û
>W1810629413
QIRF01000001
Gammaproteobacteria
Dyella sp. C9 [QIRF]
370100
370024
-
Pro
CGG
[ENA]
¡û
>W1810762584
QQAH01000001
Gammaproteobacteria
Dyella tabacisoli L4-6 [QQAH]
468544
468620
+
Pro
CGG
[ENA]
¡û
>C151039091
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
3523397
3523473
+
Pro
CGG
[Ensembl]
¡û
>ENV09004045
ADIG01001060
Groundwater metagenome 4000601.lucy.pga.C1
115179
115255
+
Pro
CGG
[ENA]
¡û
>W1511305087
JPLB01000005
Gammaproteobacteria
Luteibacter rhizovicinus DSM 16549 [JPLB]
90153
90229
+
Pro
CGG
[ENA]
¡û
>W1511305227
JPLD01000024
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
35038
35114
+
Pro
CGG
[ENA]
¡û
>W1511433928
JUHO01000001
Gammaproteobacteria
Luteibacter sp. 9133 [JUHO]
1405440
1405364
-
Pro
CGG
[ENA]
¡û
>W1511511139
JXSS01000054
Gammaproteobacteria
Lysobacter sp. A03 [JXSS]
29504
29428
-
Pro
CGG
[ENA]
¡û
>W1511547596
JZRB01000062
Gammaproteobacteria
Luteibacter yeojuensis SU11 [JZRB]
19804
19880
+
Pro
CGG
[ENA]
¡û
>W1511686281
LFQR01000030
Gammaproteobacteria
Frateuria defendens Hyalesthes Obsoletus HyOG [LFQR]
38002
37926
-
Pro
CGG
[ENA]
¡û
>C121011599
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1844468
1844392
-
Pro
CGG
[Ensembl]
¡û
>C121011600
CP003350
Gammaproteobacteria
Frateuria aurantia DSM 6220 [CP003350]
1844132
1844056
-
Pro
CGG
[Ensembl]
¡û
>C161078263
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
570533
570457
-
Pro
CGG
[Ensembl]
¡û
>W1610027254
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
60492
60416
-
Pro
CGG
[ENA]
¡û
>W121017571
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
856143
856219
+
Pro
CGG
[ENA]
¡û
>W121017572
AGRV01000013
Gammaproteobacteria
Frateuria aurantia DSM 6220 [AGRV]
856479
856555
+
Pro
CGG
[ENA]
¡û
>W121071285
AJXU01000043
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
1798
1722
-
Pro
CGG
[ENA]
¡û
>W1610616774
LGRQ01000021
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
33760
33684
-
Pro
CGG
[ENA]
¡û
>W1610725530
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1319370
1319446
+
Pro
CGG
[ENA]
¡û
>W1610728017
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1398850
1398926
+
Pro
CGG
[ENA]
¡û
>W1610742964
LMSL01000039
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
25045
25121
+
Pro
CGG
[ENA]
¡û
>W1710023488
AVPS01000004
Gammaproteobacteria
Lysobacter concretionis Ko07 = DSM 16239 [AVPS]
60492
60416
-
Pro
CGG
[ENA]
¡û
>W1710515293
FNBR01000009
Gammaproteobacteria
Dyella sp. 333MFSha [FNBR]
25338
25262
-
Pro
CGG
[ENA]
¡û
>W1710545816
FOBU01000002
Gammaproteobacteria
Luteibacter sp. UNCMF331Sha3.1 [FOBU]
708909
708833
-
Pro
CGG
[ENA]
¡û
>W1710548698
FODZ01000003
Gammaproteobacteria
Luteibacter sp. UNC138MFCol5.1 [FODZ]
518561
518637
+
Pro
CGG
[ENA]
¡û
>W1710555192
FOJE01000001
Gammaproteobacteria
Luteibacter sp. 329MFSha [FOJE]
1824950
1825026
+
Pro
CGG
[ENA]
¡û
>W1710560304
FONH01000001
Gammaproteobacteria
Dyella marensis [FONH]
627535
627611
+
Pro
CGG
[ENA]
¡û
>W1710575669
FOZI01000003
Gammaproteobacteria
Dyella sp. OK004 [FOZI]
828683
828759
+
Pro
CGG
[ENA]
¡û
>W1710579682
FPIS01000002
Gammaproteobacteria
Luteibacter sp. UNCMF366Tsu5.1 [FPIS]
935970
935894
-
Pro
CGG
[ENA]
¡û
>W1710592227
FRCH01000002
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
438307
438231
-
Pro
CGG
[ENA]
¡û
>W1710603083
FUYT01000025
Gammaproteobacteria
Luteibacter sp. 22Crub2.1 [FUYT]
17494
17570
+
Pro
CGG
[ENA]
¡û
>W1710742113
LGRQ01000021
Gammaproteobacteria
Luteibacter rhizovicinus [LGRQ]
33760
33684
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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