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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155663 (67 seq.)
>W1710854963
LLXY01000008
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
13809
13733
-
Arg
CCG
[ENA]
¡û
>W1711228866
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44839
44915
+
Arg
CCG
[ENA]
¡û
>W1711501670
MKRW01000189
Alphaproteobacteria
Alphaproteobacteria bacterium 62-8 [MKRW]
5103
5179
+
Arg
CCG
[ENA]
¡û
>W1711502545
MKSU01000016
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
296316
296392
+
Arg
CCG
[ENA]
¡û
>W1712104587
NIPV01000024
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
392
316
-
Arg
CCG
[ENA]
¡û
>W1712104686
NIPX01000033
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
268005
268081
+
Arg
CCG
[ENA]
¡û
>C171075887
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
2878554
2878478
-
Arg
CCG
-
¡û
>C171101493
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3549964
3549888
-
Arg
CCG
-
¡û
>WENV180014038
FPIC01034385
[FPIC] soil metagenome; Soil
259
335
+
Arg
CCG
[ENA]
¢þ
>WENV180026490
FTIU01000105
[FTIU] metagenome; soil
3225
3149
-
Arg
CCG
[ENA]
¢þ
>WENV180309136
OBJR01575137
[OBJR] soil metagenome; soil
143
219
+
Arg
CCG
[ENA]
¢þ
>WENV180309243
OBJR01741299
[OBJR] soil metagenome; soil
200
124
-
Arg
CCG
[ENA]
¢þ
>WENV180396690
OBPV01060648
[OBPV] marine metagenome; ENVO:00002010
85
9
-
Arg
CCG
[ENA]
¢þ
>WENV180397842
OBPZ01014972
[OBPZ] marine metagenome; ENVO:00002010
31
107
+
Arg
CCG
[ENA]
¢þ
>WENV180691810
OCZS010226513
[OCZS] soil metagenome; soil
273
349
+
Arg
CCG
[ENA]
¢þ
>W141093726
AVBN01000006
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
276917
276841
-
Arg
CCG
[ENA]
¡û
>W141093727
AVBN01000006
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
145241
145165
-
Arg
CCG
[ENA]
¡û
>W141093765
AVBO01000004
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
11505
11581
+
Arg
CCG
[ENA]
¡û
>W141093766
AVBO01000004
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
143181
143257
+
Arg
CCG
[ENA]
¡û
>W141093816
AVBP01000003
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
277017
276941
-
Arg
CCG
[ENA]
¡û
>W141093817
AVBP01000003
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
145341
145265
-
Arg
CCG
[ENA]
¡û
>W141093888
AVBQ01000027
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
277032
276956
-
Arg
CCG
[ENA]
¡û
>W141093889
AVBQ01000027
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
145356
145280
-
Arg
CCG
[ENA]
¡û
>WENV181166317
OEIU01000085
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
12927
13003
+
Arg
CCG
[ENA]
¢þ
>WENV181169177
OEIV010000522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
653
729
+
Arg
CCG
[ENA]
¢þ
>WENV181188397
OEOE01117587
[OEOE] activated sludge metagenome; Activated Sludge
229
153
-
Arg
CCG
[ENA]
¢þ
>WENV181311377
OFJB01001260
[OFJB] sludge metagenome; sludge
70
146
+
Arg
CCG
[ENA]
¢þ
>WENV182966078
OKWU01000790
[OKWU] human gut metagenome; stool
347
423
+
Arg
CCG
[ENA]
¢þ
>WENV183528914
ONZX01015548
[ONZX] human gut metagenome; human gut
438
362
-
Arg
CCG
[ENA]
¢þ
>WENV183675375
ORJL011502336
[ORJL] groundwater metagenome; groundwater
309
385
+
Arg
CCG
[ENA]
¢þ
>WENV183750478
PPFU01310041
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1718
1794
+
Arg
CCG
[ENA]
¢þ
>WENV170013493
AUZX01012074
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
501
577
+
Arg
CCG
[ENA]
¢þ
>WENV170553127
CXWK01008712
[CXWK] wastewater metagenome; activated sludge
1169
1093
-
Arg
CCG
[ENA]
¢þ
>WENV170577088
FRDC01003082
[FRDC] freshwater metagenome; water
285
361
+
Arg
CCG
[ENA]
¢þ
>WENV170577251
FRDC01004238
[FRDC] freshwater metagenome; water
71271
71195
-
Arg
CCG
[ENA]
¢þ
>WENV170577814
FSSH01001557
[FSSH] freshwater metagenome; drinking water
5810
5734
-
Arg
CCG
[ENA]
¢þ
>WENV170653154
JRYI01008046
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
268
344
+
Arg
CCG
[ENA]
¢þ
>WENV170710970
LNFM01003144
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
573
497
-
Arg
CCG
[ENA]
¢þ
>W141461727
JFGS01000037
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
33285
33209
-
Arg
CCG
[ENA]
¡û
>C181003233
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
1023922
1023998
+
Arg
CCG
-
¡û
>C181089642
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2395271
2395195
-
Arg
CCG
-
¡û
>C191220339
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
3688870
3688794
-
Arg
CCG
-
¡û
>W141739308
JNNO01000034
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
125089
125165
+
Arg
CCG
[ENA]
¡û
>W141807531
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
454265
454189
-
Arg
CCG
[ENA]
¡û
>W1910693429
MDEO01000036
Alphaproteobacteria
Mesorhizobium hungaricum UASWS1009 [MDEO]
373520
373444
-
Arg
CCG
[ENA]
¡û
>W1911718476
QQWJ01000008
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
114307
114383
+
Arg
CCG
[ENA]
¡û
>W1911718505
QQWK01000002
Alphaproteobacteria
Sphingomonas koreensis KCTC 2882 [QQWK]
68615
68539
-
Arg
CCG
[ENA]
¡û
>W1911719133
QQWX01000021
Alphaproteobacteria
Sphingomonas sp. ABOLF ABOLF S-NIH.Pt19_1214 [QQWX]
7867
7943
+
Arg
CCG
[ENA]
¡û
>W1911802571
QYUK01000011
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
3597382
3597306
-
Arg
CCG
[ENA]
¡û
>W1810089105
PGEN01000001
Alphaproteobacteria
Sphingomonas koreensis JSS26 [PGEN]
2635504
2635580
+
Arg
CCG
[ENA]
¡û
>W10118842
ADVE01000061
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6200
6276
+
Arg
CCG
[ENA]
¡û
>C10111664
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
1964259
1964335
+
Arg
CCG
[Ensembl]
¡û
>W1511348659
JRKP01000069
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
13813
13889
+
Arg
CCG
[ENA]
¡û
>W1511348693
JRKQ01000036
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
3726
3650
-
Arg
CCG
[ENA]
¡û
>W1511348745
JRKR01000070
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
9294
9370
+
Arg
CCG
[ENA]
¡û
>W1511348788
JRKS01000017
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
34196
34272
+
Arg
CCG
[ENA]
¡û
>W1511348842
JRKT01000061
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
7176
7100
-
Arg
CCG
[ENA]
¡û
>W1511399862
JTGD01000004
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
187948
187872
-
Arg
CCG
[ENA]
¡û
>W11125014
ADVE01000061
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6200
6276
+
Arg
CCG
[ENA]
¡û
>C161043665
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
4316622
4316546
-
Arg
CCG
[Ensembl]
¡û
>W1610071956
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
203830
203906
+
Arg
CCG
[ENA]
¡û
>W1610076592
BCYW01000001
Alphaproteobacteria
Sphingomonas koreensis NBRC 16723 [BCYW]
220525
220449
-
Arg
CCG
[ENA]
¡û
>W1610717304
LLXY01000008
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
13809
13733
-
Arg
CCG
[ENA]
¡û
>W1611012783
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44839
44915
+
Arg
CCG
[ENA]
¡û
>W1710069158
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
203830
203906
+
Arg
CCG
[ENA]
¡û
>W1710074281
BCYW01000001
Alphaproteobacteria
Sphingomonas koreensis NBRC 16723 [BCYW]
220525
220449
-
Arg
CCG
[ENA]
¡û
>W1710528195
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
332162
332238
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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