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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155790 (57 seq.)
>W1710892880
LNEF01000190
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
11750
11674
-
Met
CAT
[ENA]
¡û
>W131249838
CAUA01000072
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
72257
72181
-
Met
CAT
[ENA]
¡û
>WENV180255625
OBEQ010740420
[OBEQ] groundwater metagenome; groundwater
391
316
-
Ile2
CAT
[ENA]
¢þ
>WENV181167555
OEIU01042872
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
911
835
-
Ile2
CAT
[ENA]
¢þ
>WENV183667742
ORJL010677619
[ORJL] groundwater metagenome; groundwater
444
520
+
Ile2
CAT
[ENA]
¢þ
>WENV183667746
ORJL010677810
[ORJL] groundwater metagenome; groundwater
445
520
+
Ile2
CAT
[ENA]
¢þ
>WENV183668472
ORJL010743208
[ORJL] groundwater metagenome; groundwater
86
162
+
Ile2
CAT
[ENA]
¢þ
>WENV183668785
ORJL010772832
[ORJL] groundwater metagenome; groundwater
28328
28252
-
Ile2
CAT
[ENA]
¢þ
>WENV183673803
ORJL011320103
[ORJL] groundwater metagenome; groundwater
21
96
+
Ile2
CAT
[ENA]
¢þ
>WENV183685912
ORMF010921155
[ORMF] groundwater metagenome; groundwater
289
364
+
Ile2
CAT
[ENA]
¢þ
>WENV183689646
ORMF011470496
[ORMF] groundwater metagenome; groundwater
7415
7339
-
Ile2
CAT
[ENA]
¢þ
>WENV183694313
ORMF012215777
[ORMF] groundwater metagenome; groundwater
1277
1201
-
Ile2
CAT
[ENA]
¢þ
>WENV183696113
ORMF012504250
[ORMF] groundwater metagenome; groundwater
108
184
+
Ile2
CAT
[ENA]
¢þ
>WENV170555901
CXWL01003057
[CXWL] groundwater metagenome; biofilm material
355
279
-
Met
CAT
[ENA]
¢þ
>WENV170556247
CXWL01006121
[CXWL] groundwater metagenome; biofilm material
732
656
-
Met
CAT
[ENA]
¢þ
>WENV170556981
CXWL01017067
[CXWL] groundwater metagenome; biofilm material
1745
1669
-
Met
CAT
[ENA]
¢þ
>WENV170577984
FSSH01004718
[FSSH] freshwater metagenome; drinking water
14357
14433
+
Met
CAT
[ENA]
¢þ
>WENV170712265
LNFM01011604
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11745
11669
-
Met
CAT
[ENA]
¢þ
>WENV170712458
LNFM01013563
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
166
242
+
Met
CAT
[ENA]
¢þ
>WENV170713918
LNFM01046689
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
226
150
-
Met
CAT
[ENA]
¢þ
>C181049319
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
2915683
2915607
-
Met
CAT
-
¡û
>W141558429
JHVX01000006
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
47411
47335
-
Met
CAT
[ENA]
¡û
>W141565152
JIBI01000005
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
74084
74160
+
Met
CAT
[ENA]
¡û
>W09133587
ACPG01000049
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
10915
10839
-
Met
CAT
[ENA]
¡û
>W1910226499
FMWO01000048
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
106444
106520
+
Met
CAT
[ENA]
¡û
>W1910338819
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
599279
599355
+
Met
CAT
[ENA]
¡û
>W1911496585
OCMU01000001
Betaproteobacteria
Nitrosomonas ureae Nm42 [OCMU]
1470562
1470638
+
Met
CAT
[ENA]
¡û
>W1911496923
OCMZ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
1109404
1109328
-
Met
CAT
[ENA]
¡û
>W1810389569
PXXU01000081
Betaproteobacteria
Nitrosomonas supralitoralis APG5 [PXXU]
5518
5594
+
Met
CAT
[ENA]
¡û
>W1810464067
QAAC01000002
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
107869
107793
-
Met
CAT
[ENA]
¡û
>W1810477254
QAOR01000002
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
284038
284114
+
Met
CAT
[ENA]
¡û
>W1810503410
QBKC01000003
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
184659
184735
+
Met
CAT
[ENA]
¡û
>W1810658841
QJJP01000012
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
1281
1205
-
Met
CAT
[ENA]
¡û
>W1810659198
QJJW01000013
Betaproteobacteria
Nitrosomonas ureae Nm5 [QJJW]
43877
43953
+
Met
CAT
[ENA]
¡û
>C151082887
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
305032
304956
-
Met
CAT
[Ensembl]
¡û
>C151094453
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
2653664
2653740
+
Met
CAT
-
¡û
>C11115631
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
3057221
3057145
-
Met
CAT
[Ensembl]
¡û
>C11115688
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
293491
293415
-
Met
CAT
[Ensembl]
¡û
>W1511508755
JXQM01000003
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
168806
168730
-
Met
CAT
[ENA]
¡û
>C161055562
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
988188
988264
+
Met
CAT
[Ensembl]
¡û
>W1610753146
LNEF01000190
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
11750
11674
-
Met
CAT
[ENA]
¡û
>W1710505972
FMUF01000010
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
115492
115568
+
Met
CAT
[ENA]
¡û
>W1710507275
FMVD01000002
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
272092
272168
+
Met
CAT
[ENA]
¡û
>W1710509133
FMWY01000001
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
44873
44949
+
Met
CAT
[ENA]
¡û
>W1710517421
FNDH01000063
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
1110
1034
-
Met
CAT
[ENA]
¡û
>W1710527349
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
3188664
3188588
-
Met
CAT
[ENA]
¡û
>W1710527928
FNLN01000001
Betaproteobacteria
Nitrosomonas ureae [FNLN]
17863
17939
+
Met
CAT
[ENA]
¡û
>W1710528539
FNNH01000024
Betaproteobacteria
Nitrosomonas communis [FNNH]
47997
48073
+
Met
CAT
[ENA]
¡û
>W1710531584
FNPQ01000027
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
37724
37800
+
Met
CAT
[ENA]
¡û
>W1710538922
FNUX01000029
Betaproteobacteria
Nitrosomonas ureae [FNUX]
32865
32789
-
Met
CAT
[ENA]
¡û
>W1710548571
FODX01000001
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
1103711
1103635
-
Met
CAT
[ENA]
¡û
>W1710551216
FOFX01000005
Betaproteobacteria
Nitrosomonas ureae [FOFX]
8642
8566
-
Met
CAT
[ENA]
¡û
>W1710560162
FONE01000007
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
90634
90710
+
Met
CAT
[ENA]
¡û
>W1710565314
FORD01000036
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
920
844
-
Met
CAT
[ENA]
¡û
>W1710567276
FOSP01000019
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
39518
39594
+
Met
CAT
[ENA]
¡û
>W1710569060
FOUB01000051
Betaproteobacteria
Nitrosomonas communis [FOUB]
22964
23040
+
Met
CAT
[ENA]
¡û
>W1710573492
FOXN01000005
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
20775
20699
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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