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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159719 (35 seq.)
>WENV170012900
ASRP01012737
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
284
208
-
Arg
TCT
[ENA]
¡û
>WENV170014497
AYRG01004225
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
141
217
+
Arg
TCT
[ENA]
¡û
>WENV170646373
JQGR01000348
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
452
376
-
Arg
TCT
[ENA]
¡û
>WENV170646375
JQGR01000348
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
225
149
-
Arg
TCT
[ENA]
¡û
>WENV170724146
LSQX01295295
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
17605
17529
-
Arg
TCT
[ENA]
¡û
>C181196969
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
229897
229973
+
Arg
TCT
-
¡û
>C181196971
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
230122
230198
+
Arg
TCT
-
¡û
>C191084645
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
264967
265043
+
Arg
TCT
-
¡û
>C191084647
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
265194
265270
+
Arg
TCT
-
¡û
>W1911413072
NWVW01000014
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
21274
21198
-
Arg
TCT
[ENA]
¡û
>W1911413074
NWVW01000014
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
426
350
-
Arg
TCT
[ENA]
¡û
>W1911413101
NWVX01000012
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
7476
7400
-
Arg
TCT
[ENA]
¡û
>W1911413103
NWVX01000012
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
444
368
-
Arg
TCT
[ENA]
¡û
>W1911419392
NXAO01000052
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
25280
25356
+
Arg
TCT
[ENA]
¡û
>W1911419394
NXAO01000052
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
25507
25583
+
Arg
TCT
[ENA]
¡û
>W1911426284
NXIF01000034
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
58228
58304
+
Arg
TCT
[ENA]
¡û
>W1911426286
NXIF01000034
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
58453
58529
+
Arg
TCT
[ENA]
¡û
>W1911576379
PDJY01000044
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
7525
7449
-
Arg
TCT
[ENA]
¡û
>W1911576381
PDJY01000044
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
354
278
-
Arg
TCT
[ENA]
¡û
>W1810295915
PTIW01000022
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
745
669
-
Arg
TCT
[ENA]
¡û
>W1810295917
PTIW01000022
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
518
442
-
Arg
TCT
[ENA]
¡û
>W2011138865
NWVW01000014
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
21274
21198
-
Arg
TCT
[ENA]
¡û
>W2011138867
NWVW01000014
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
426
350
-
Arg
TCT
[ENA]
¡û
>W2011138894
NWVX01000012
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
7476
7400
-
Arg
TCT
[ENA]
¡û
>W2011138896
NWVX01000012
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
444
368
-
Arg
TCT
[ENA]
¡û
>W2011139290
NXAO01000052
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
25280
25356
+
Arg
TCT
[ENA]
¡û
>W2011139292
NXAO01000052
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
25507
25583
+
Arg
TCT
[ENA]
¡û
>W2011145142
NXIF01000034
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
58228
58304
+
Arg
TCT
[ENA]
¡û
>W2011145144
NXIF01000034
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
58453
58529
+
Arg
TCT
[ENA]
¡û
>W2011186193
PDJY01000044
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
7525
7449
-
Arg
TCT
[ENA]
¡û
>W2011186195
PDJY01000044
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
354
278
-
Arg
TCT
[ENA]
¡û
>C241068603
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
282361
282437
+
Arg
TCT
-
¡û
>C241068605
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
303209
303285
+
Arg
TCT
-
¡û
>W1710602838
FUYO01000020
Campylobacterota
Malaciobacter marinus [FUYO]
50968
51044
+
Arg
TCT
[ENA]
¡û
>W1710602840
FUYO01000020
Campylobacterota
Malaciobacter marinus [FUYO]
57920
57996
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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