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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160030 (15 seq.)
>W1911565512
PCOC01000001
Alphaproteobacteria
Ochrobactrum sp. MYb71 [PCOC]
1282391
1282467
+
Arg
CCG
[ENA]
¡û
>W1911565792
PCOI01000001
Alphaproteobacteria
Ochrobactrum sp. MYb49 [PCOI]
1142752
1142828
+
Arg
CCG
[ENA]
¡û
>W1911566069
PCOO01000001
Alphaproteobacteria
Ochrobactrum sp. MYb15 [PCOO]
994185
994261
+
Arg
CCG
[ENA]
¡û
>W1911566127
PCOP01000001
Alphaproteobacteria
Ochrobactrum sp. MYb14 [PCOP]
841720
841644
-
Arg
CCG
[ENA]
¡û
>W1911566967
PCPF01000017
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
55523
55447
-
Arg
CCG
[ENA]
¡û
>W1911567301
PCPM01000014
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
38887
38963
+
Arg
CCG
[ENA]
¡û
>W1911569104
PCQR01000011
Alphaproteobacteria
Ochrobactrum sp. 720/2009 [PCQR]
59173
59097
-
Arg
CCG
[ENA]
¡û
>W1911569135
PCQS01000006
Alphaproteobacteria
Ochrobactrum sp. 715/2009 [PCQS]
49481
49557
+
Arg
CCG
[ENA]
¡û
>W1911765486
QXCX01000003
Alphaproteobacteria
Ochrobactrum haematophilum L1Suc [QXCX]
400472
400548
+
Arg
CCG
[ENA]
¡û
>W2011177796
PCOC01000001
Alphaproteobacteria
Ochrobactrum sp. MYb71 [PCOC]
1282391
1282467
+
Arg
CCG
[ENA]
¡û
>W2011769822
UBMQ01000020
Alphaproteobacteria
Rhizobiales bacterium [UBMQ]
87064
86988
-
Arg
CCG
[ENA]
¡û
>W2011779121
UBUZ01000009
Alphaproteobacteria
Rhizobiales bacterium [UBUZ]
246511
246587
+
Arg
CCG
[ENA]
¡û
>W2011793611
UCHR01000015
Alphaproteobacteria
Rhizobiales bacterium [UCHR]
109902
109978
+
Arg
CCG
[ENA]
¡û
>W2011798079
UCLN01000015
Alphaproteobacteria
Rhizobiales bacterium [UCLN]
87064
86988
-
Arg
CCG
[ENA]
¡û
>W2011803439
UEIJ01000005
Alphaproteobacteria
Rhizobiales bacterium [UEIJ]
87064
86988
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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