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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160383 (123 seq.)
>W1710854963
LLXY01000008
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
13809
13733
-
Arg
CCG
[ENA]
¡û
>W1711228866
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44839
44915
+
Arg
CCG
[ENA]
¡û
>W1711501670
MKRW01000189
Alphaproteobacteria
Alphaproteobacteria bacterium 62-8 [MKRW]
5103
5179
+
Arg
CCG
[ENA]
¡û
>W1711502545
MKSU01000016
Alphaproteobacteria
Sphingomonas sp. 67-36 [MKSU]
296316
296392
+
Arg
CCG
[ENA]
¡û
>W1712104587
NIPV01000024
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
392
316
-
Arg
CCG
[ENA]
¡û
>W1712104686
NIPX01000033
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
268005
268081
+
Arg
CCG
[ENA]
¡û
>C171075887
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
2878554
2878478
-
Arg
CCG
-
¡û
>C171101493
CP019948
Alphaproteobacteria
Methylocystis bryophila S285 [CP019948]
3549964
3549888
-
Arg
CCG
-
¡û
>w015421
AAPC01000023
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
21143
21070
-
Arg
CCG
[ENA]
¡û
>WENV180014038
FPIC01034385
[FPIC] soil metagenome; Soil
259
335
+
Arg
CCG
[ENA]
¡û
>WENV180026490
FTIU01000105
[FTIU] metagenome; soil
3225
3149
-
Arg
CCG
[ENA]
¡û
>WENV180309136
OBJR01575137
[OBJR] soil metagenome; soil
143
219
+
Arg
CCG
[ENA]
¡û
>WENV180309243
OBJR01741299
[OBJR] soil metagenome; soil
200
124
-
Arg
CCG
[ENA]
¡û
>WENV180396690
OBPV01060648
[OBPV] marine metagenome; ENVO:00002010
85
9
-
Arg
CCG
[ENA]
¡û
>WENV180397842
OBPZ01014972
[OBPZ] marine metagenome; ENVO:00002010
31
107
+
Arg
CCG
[ENA]
¡û
>WENV180691810
OCZS010226513
[OCZS] soil metagenome; soil
273
349
+
Arg
CCG
[ENA]
¡û
>W141093726
AVBN01000006
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
276917
276841
-
Arg
CCG
[ENA]
¡û
>W141093727
AVBN01000006
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C1 [AVBN]
145241
145165
-
Arg
CCG
[ENA]
¡û
>W141093765
AVBO01000004
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
11505
11581
+
Arg
CCG
[ENA]
¡û
>W141093766
AVBO01000004
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C2 [AVBO]
143181
143257
+
Arg
CCG
[ENA]
¡û
>W141093816
AVBP01000003
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
277017
276941
-
Arg
CCG
[ENA]
¡û
>W141093817
AVBP01000003
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C3 [AVBP]
145341
145265
-
Arg
CCG
[ENA]
¡û
>W141093888
AVBQ01000027
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
277032
276956
-
Arg
CCG
[ENA]
¡û
>W141093889
AVBQ01000027
Alphaproteobacteria
Mesorhizobium sp. NBIMC_P2-C4 [AVBQ]
145356
145280
-
Arg
CCG
[ENA]
¡û
>WENV181166317
OEIU01000085
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
12927
13003
+
Arg
CCG
[ENA]
¡û
>WENV181169177
OEIV010000522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
653
729
+
Arg
CCG
[ENA]
¡û
>WENV181188397
OEOE01117587
[OEOE] activated sludge metagenome; Activated Sludge
229
153
-
Arg
CCG
[ENA]
¡û
>WENV181308137
OFIS01000313
[OFIS] sludge metagenome; sludge
203
279
+
Arg
CCG
[ENA]
¡û
>WENV181311377
OFJB01001260
[OFJB] sludge metagenome; sludge
70
146
+
Arg
CCG
[ENA]
¡û
>WENV181402096
OFTY01000113
[OFTY] sludge metagenome; sludge
54599
54675
+
Arg
CCG
[ENA]
¡û
>W141151386
AXBA01000019
Alphaproteobacteria
Azorhizobium doebereinerae UFLA1-100 [AXBA]
1281
1357
+
Arg
CCG
[ENA]
¡û
>C08011429
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
587540
587616
+
Arg
CCG
[Ensembl]
¡û
>W141278498
JAFO01000001
Alphaproteobacteria
Xanthobacter sp. 126 [JAFO]
4163723
4163647
-
Arg
CCG
[ENA]
¡û
>WENV183528914
ONZX01015548
[ONZX] human gut metagenome; human gut
438
362
-
Arg
CCG
[ENA]
¡û
>WENV183750478
PPFU01310041
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1718
1794
+
Arg
CCG
[ENA]
¡û
>WENV170013493
AUZX01012074
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
501
577
+
Arg
CCG
[ENA]
¡û
>WENV170577088
FRDC01003082
[FRDC] freshwater metagenome; water
285
361
+
Arg
CCG
[ENA]
¡û
>WENV170577251
FRDC01004238
[FRDC] freshwater metagenome; water
71271
71195
-
Arg
CCG
[ENA]
¡û
>WENV170577814
FSSH01001557
[FSSH] freshwater metagenome; drinking water
5810
5734
-
Arg
CCG
[ENA]
¡û
>WENV170653154
JRYI01008046
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
268
344
+
Arg
CCG
[ENA]
¡û
>WENV170710970
LNFM01003144
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
573
497
-
Arg
CCG
[ENA]
¡û
>W141461727
JFGS01000037
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
33285
33209
-
Arg
CCG
[ENA]
¡û
>C181003233
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
1023922
1023998
+
Arg
CCG
-
¡û
>C181089642
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
2395271
2395195
-
Arg
CCG
-
¡û
>C191220339
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
3688870
3688794
-
Arg
CCG
-
¡û
>W141730091
JNIB01000001
Alphaproteobacteria
Xanthobacter sp. 91 [JNIB]
564562
564486
-
Arg
CCG
[ENA]
¡û
>W141739308
JNNO01000034
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
125089
125165
+
Arg
CCG
[ENA]
¡û
>W141807531
JPOM01000001
Alphaproteobacteria
Caulobacteraceae bacterium PMMR1 [JPOM]
454265
454189
-
Arg
CCG
[ENA]
¡û
>W1910693429
MDEO01000036
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
373520
373444
-
Arg
CCG
[ENA]
¡û
>W1911718476
QQWJ01000008
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
114307
114383
+
Arg
CCG
[ENA]
¡û
>W1911718505
QQWK01000002
Alphaproteobacteria
Sphingomonas koreensis KCTC 2882 [QQWK]
68615
68539
-
Arg
CCG
[ENA]
¡û
>W1911719133
QQWX01000021
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
7867
7943
+
Arg
CCG
[ENA]
¡û
>W1911802571
QYUK01000011
Alphaproteobacteria
Oleomonas sp. K1W22B-8 [QYUK]
3597382
3597306
-
Arg
CCG
[ENA]
¡û
>W1810089105
PGEN01000001
Alphaproteobacteria
Sphingomonas koreensis JSS26 [PGEN]
2635504
2635580
+
Arg
CCG
[ENA]
¡û
>W2010493377
JAAKGV010000001
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
534222
534146
-
Arg
CCG
[ENA]
¡û
>W2010559973
JAASQO010000017
Alphaproteobacteria
Parvibaculum indicum DSM 25305 [JAASQO]
4679
4603
-
Arg
CCG
[ENA]
¡û
>W2010593030
JABEPP010000004
Alphaproteobacteria
Enterovirga sp. DB1703 [JABEPP]
320312
320388
+
Arg
CCG
[ENA]
¡û
>W2010593127
JABEPR010000005
Alphaproteobacteria
Sphingomonas sp. ID1715 [JABEPR]
62004
61928
-
Arg
CCG
[ENA]
¡û
>W2010593460
JABEQG010000033
Alphaproteobacteria
Gluconacetobacter diazotrophicus LMG 7603 [JABEQG]
28323
28399
+
Arg
CCG
[ENA]
¡û
>W2010670404
JACCAY010000001
Alphaproteobacteria
Mesorhizobium sp. YL-MPnR-2016 [JACCAY]
3898092
3898168
+
Arg
CCG
[ENA]
¡û
>W2010703635
JACHIH010000003
Alphaproteobacteria
Rhodopseudomonas rhenobacensis DSM 12706 [JACHIH]
192831
192755
-
Arg
CCG
[ENA]
¡û
>W2010711929
JACHNZ010000002
Alphaproteobacteria
Sphingosinicella soli DSM 17328 [JACHNZ]
19915
19991
+
Arg
CCG
[ENA]
¡û
>W2010724556
JACIDK010000002
Alphaproteobacteria
Phenylobacterium haematophilum DSM 21793 [JACIDK]
173097
173021
-
Arg
CCG
[ENA]
¡û
>W2010731224
JACIIW010000011
Alphaproteobacteria
Xanthobacter tagetidis DSM 11105 [JACIIW]
22272
22196
-
Arg
CCG
[ENA]
¡û
>W2010827243
MDEO01000036
Alphaproteobacteria
Mesorhizobium sp. UASWS1009 [MDEO]
373520
373444
-
Arg
CCG
[ENA]
¡û
>W2011286466
QQWJ01000008
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
114307
114383
+
Arg
CCG
[ENA]
¡û
>W2011286495
QQWK01000002
Alphaproteobacteria
Sphingomonas koreensis KCTC 2882 [QQWK]
68615
68539
-
Arg
CCG
[ENA]
¡û
>W2011287123
QQWX01000021
Alphaproteobacteria
Sphingomonas sp. ABOLF S-NIH.Pt19_1214 [QQWX]
7867
7943
+
Arg
CCG
[ENA]
¡û
>W2011344202
QYUK01000011
Alphaproteobacteria
Oleomonas sp. K1W22B-8 [QYUK]
3597382
3597306
-
Arg
CCG
[ENA]
¡û
>W2011402574
RCTF01000016
Alphaproteobacteria
Xanthobacter tagetidis ATCC 700314 [RCTF]
22304
22228
-
Arg
CCG
[ENA]
¡û
>W2011479729
RQSI01000064
Alphaproteobacteria
Novosphingobium sp. LASN5T [RQSI]
14322
14398
+
Arg
CCG
[ENA]
¡û
>W2011495104
RWKS01000061
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
2427
2503
+
Arg
CCG
[ENA]
¡û
>W2011604975
SJFN01000030
Alphaproteobacteria
Ancalomicrobiaceae bacterium SA-279 [SJFN]
10099
10023
-
Arg
CCG
[ENA]
¡û
>W2011655000
SOBM01000005
Alphaproteobacteria
Azorhizobium sp. AG788 [SOBM]
450673
450597
-
Arg
CCG
[ENA]
¡û
>W2011754116
SZWJ01000022
Alphaproteobacteria
Caulobacter sp. SSI4214 [SZWJ]
35973
36049
+
Arg
CCG
[ENA]
¡û
>W2011963354
VAUP01000013
Alphaproteobacteria
Xanthobacter autotrophicus DSM 432 [VAUP]
39147
39223
+
Arg
CCG
[ENA]
¡û
>W2012378835
WMIF01000047
Alphaproteobacteria
Paracoccus limosus JCM 17370 [WMIF]
1640
1564
-
Arg
CCG
[ENA]
¡û
>W2110094419
CAJCJC010000400
Alphaproteobacteria
Alphaproteobacteria bacterium [CAJCJC]
5625
5549
-
Arg
CCG
[ENA]
¡û
>W2110104064
CAJFZY010000035
Alphaproteobacteria
Brevundimonas aurantiaca Marseille-P5761 [CAJFZY]
11682
11606
-
Arg
CCG
[ENA]
¡û
>W2110319270
JADHDT010000006
Alphaproteobacteria
Sphingomonas sp. REN5 [JADHDT]
330378
330302
-
Arg
CCG
[ENA]
¡û
>W2110472871
JAFCKD010000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens SZCCT0341 [JAFCKD]
178792
178868
+
Arg
CCG
[ENA]
¡û
>W2110472920
JAFCKE010000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens SZCCT0340 [JAFCKE]
178932
179008
+
Arg
CCG
[ENA]
¡û
>W2110473205
JAFCKK010000003
Alphaproteobacteria
Bradyrhizobium diazoefficiens SZCCT0287 [JAFCKK]
178932
179008
+
Arg
CCG
[ENA]
¡û
>W2110473900
JAFCKY010000025
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0136 [JAFCKY]
85530
85606
+
Arg
CCG
[ENA]
¡û
>W2110473945
JAFCKZ010000022
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0135 [JAFCKZ]
98741
98817
+
Arg
CCG
[ENA]
¡û
>W2110474137
JAFCLD010000021
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0127 [JAFCLD]
85530
85606
+
Arg
CCG
[ENA]
¡û
>W2110474368
JAFCLI010000026
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0108 [JAFCLI]
85530
85606
+
Arg
CCG
[ENA]
¡û
>W2110474506
JAFCLL010000026
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0052 [JAFCLL]
85530
85606
+
Arg
CCG
[ENA]
¡û
>W2110474553
JAFCLM010000026
Alphaproteobacteria
Bradyrhizobium viridifuturi SZCCT0047 [JAFCLM]
85530
85606
+
Arg
CCG
[ENA]
¡û
>W2110515292
JAFMPP010000022
Alphaproteobacteria
Jiella sp. CQZ9-1 [JAFMPP]
45688
45764
+
Arg
CCG
[ENA]
¡û
>W2110540681
JAGGML010000001
Alphaproteobacteria
Xanthobacter flavus WS4821 [JAGGML]
3769592
3769668
+
Arg
CCG
[ENA]
¡û
>W2110661606
JAHXRP010000001
Alphaproteobacteria
Roseovarius mucosus Rose1 [JAHXRP]
11721
11645
-
Arg
CCG
[ENA]
¡û
>W2110687593
JAINDZ010000043
Alphaproteobacteria
Methylosinus sp. Sm6 [JAINDZ]
24415
24339
-
Arg
CCG
[ENA]
¡û
>C211176123
CP063362
Alphaproteobacteria
Xanthobacter sp. YN2 [CP063362]
2520354
2520430
+
Arg
CCG
-
¡û
>C211258458
CP069300
Alphaproteobacteria
Bradyrhizobium sp. PSBB068 [CP069300]
7527541
7527465
-
Arg
CCG
-
¡û
>W2110710060
JAIZDA010000040
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
26307
26231
-
Arg
CCG
[ENA]
¡û
>C231041392
CP032674
Alphaproteobacteria
Xanthobacter sp. YC-JY1 [CP032674]
3800943
3800867
-
Arg
CCG
-
¡û
>W2110762924
RCVU01000001
Alphaproteobacteria
Sphingomonas sp. TX0522 [RCVU]
550912
550988
+
Arg
CCG
[ENA]
¡û
>C241087393
CP044218
Alphaproteobacteria
Mesorhizobium terrae NIBRBAC000500504 [CP044218]
1383358
1383282
-
Arg
CCG
-
¡û
>C241087394
CP044218
Alphaproteobacteria
Mesorhizobium terrae NIBRBAC000500504 [CP044218]
1220357
1220281
-
Arg
CCG
-
¡û
>W10118842
ADVE01000061
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6200
6276
+
Arg
CCG
[ENA]
¡û
>C241151053
CP051542
Alphaproteobacteria
Paracoccus sanguinis OM2164 [CP051542]
2753691
2753615
-
Arg
CCG
-
¡û
>W2130001018
BMDZ01000061
Alphaproteobacteria
Tistrella bauzanensis CGMCC 1.10188 [BMDZ]
11475
11399
-
Arg
CCG
[ENA]
¡û
>C241237323
CP119869
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP119869]
735953
736029
+
Arg
CCG
-
¡û
>C241246595
CP123229
Alphaproteobacteria
Methylocapsa sp. D3K7 [CP123229]
1178743
1178819
+
Arg
CCG
-
¡û
>C241246607
CP123229
Alphaproteobacteria
Methylocapsa sp. D3K7 [CP123229]
3926147
3926071
-
Arg
CCG
-
¡û
>W2310021154
BSDO01000008
Alphaproteobacteria
Xanthobacter flavus 301 [BSDO]
188384
188460
+
Arg
CCG
[ENA]
¡û
>C10111664
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
1964259
1964335
+
Arg
CCG
[Ensembl]
¡û
>W1511348659
JRKP01000069
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
13813
13889
+
Arg
CCG
[ENA]
¡û
>W1511348693
JRKQ01000036
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
3726
3650
-
Arg
CCG
[ENA]
¡û
>W1511348745
JRKR01000070
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
9294
9370
+
Arg
CCG
[ENA]
¡û
>W1511348788
JRKS01000017
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
34196
34272
+
Arg
CCG
[ENA]
¡û
>W1511348842
JRKT01000061
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
7176
7100
-
Arg
CCG
[ENA]
¡û
>W1511399862
JTGD01000004
Alphaproteobacteria
Mesorhizobium sp. F7 [JTGD]
187948
187872
-
Arg
CCG
[ENA]
¡û
>W11125014
ADVE01000061
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
6200
6276
+
Arg
CCG
[ENA]
¡û
>C161043665
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
4316622
4316546
-
Arg
CCG
[Ensembl]
¡û
>W1610071956
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
203830
203906
+
Arg
CCG
[ENA]
¡û
>W1610076592
BCYW01000001
Alphaproteobacteria
Sphingomonas koreensis NBRC 16723 [BCYW]
220525
220449
-
Arg
CCG
[ENA]
¡û
>W1610717304
LLXY01000008
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
13809
13733
-
Arg
CCG
[ENA]
¡û
>W1611012783
LXWX01000117
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
44839
44915
+
Arg
CCG
[ENA]
¡û
>W1710069158
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
203830
203906
+
Arg
CCG
[ENA]
¡û
>W1710074281
BCYW01000001
Alphaproteobacteria
Sphingomonas koreensis NBRC 16723 [BCYW]
220525
220449
-
Arg
CCG
[ENA]
¡û
>W1710528195
FNNA01000001
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
332162
332238
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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