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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161517 (39 seq.)
>W1711078226
LSMR01000119
Gammaproteobacteria
Neptuniibacter sp. Phe_28 [LSMR]
10567
10643
+
Met
CAT
[ENA]
¡û
>W131179599
ARMN01000018
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
18872
18796
-
Met
CAT
[ENA]
¡û
>W131179601
ARMN01000018
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [ARMN]
18597
18521
-
Met
CAT
[ENA]
¡û
>WENV183058285
OLHP01001389
[OLHP] seawater metagenome; Sea water
234
310
+
Met
CAT
[ENA]
¡û
>WENV183058358
OLHQ01001207
[OLHQ] seawater metagenome; Sea water
2286
2210
-
Met
CAT
[ENA]
¡û
>WENV170014391
AYRF01019774
[AYRF] bioreactor metagenome; day 18 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
120
44
-
Met
CAT
[ENA]
¡û
>WENV170014601
AYRH01032773
[AYRH] bioreactor metagenome; day 46 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
73
-1
-
Met
CAT
[ENA]
¡û
>WENV170704588
LLEL01003087
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
161
237
+
Met
CAT
[ENA]
¡û
>WENV170704602
LLEL01008013
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
391
467
+
Met
CAT
[ENA]
¡û
>WENV170704654
LLEL01022240
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
183
259
+
Met
CAT
[ENA]
¡û
>WENV170781569
MAAB01038304
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
9809
9733
-
Met
CAT
[ENA]
¡û
>WENV170782614
MAAC01010652
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9911
9835
-
Met
CAT
[ENA]
¡û
>W141557699
JHVJ01000006
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
251956
252032
+
Met
CAT
[ENA]
¡û
>W1810400749
PYGI01000022
Gammaproteobacteria
Marinobacterium halophilum DSM 17586 [PYGI]
28347
28271
-
Met
CAT
[ENA]
¡û
>W2011482887
RQXV01000004
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
175540
175464
-
Met
CAT
[ENA]
¡û
>W2011482889
RQXV01000004
Gammaproteobacteria
Amphritea balenae JAMM 1525 [RQXV]
175258
175182
-
Met
CAT
[ENA]
¡û
>W2011482952
RQXW01000004
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
148652
148728
+
Met
CAT
[ENA]
¡û
>W2011482954
RQXW01000004
Gammaproteobacteria
Amphritea sp. MCCC 1K03512 ANRC-JH13 [RQXW]
148935
149011
+
Met
CAT
[ENA]
¡û
>W2110033973
BMOH01000006
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
175336
175260
-
Met
CAT
[ENA]
¡û
>W2110033975
BMOH01000006
Gammaproteobacteria
Amphritea balenae JCM 14781 [BMOH]
175054
174978
-
Met
CAT
[ENA]
¡û
>W2110496052
JAFFZO010000008
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
47483
47407
-
Met
CAT
[ENA]
¡û
>W2110496054
JAFFZO010000008
Gammaproteobacteria
Amphritea sp. ZJ14W [JAFFZO]
47273
47197
-
Met
CAT
[ENA]
¡û
>W2110496118
JAFFZP010000004
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
105754
105830
+
Met
CAT
[ENA]
¡û
>W2110496120
JAFFZP010000004
Gammaproteobacteria
Amphritea sp. RP18W [JAFFZP]
105964
106040
+
Met
CAT
[ENA]
¡û
>W2110500807
JAFIDL010000003
Gammaproteobacteria
Amphritea spongicola JCM 16668 [JAFIDL]
111394
111318
-
Met
CAT
[ENA]
¡û
>W2110612271
JAHKQE010000002
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
94292
94368
+
Met
CAT
[ENA]
¡û
>W2110612273
JAHKQE010000002
Gammaproteobacteria
Amphritea atlantica C1R06 [JAHKQE]
94572
94648
+
Met
CAT
[ENA]
¡û
>C211000091
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3311427
3311503
+
Met
CAT
-
¡û
>C211000093
AP014545
Gammaproteobacteria
Amphritea japonica ATCC BAA-1530 [AP014545]
3311711
3311787
+
Met
CAT
-
¡û
>C231011239
AP025281
Gammaproteobacteria
Aliamphritea hakodatensis PT3 [AP025281]
4107142
4107218
+
Met
CAT
-
¡û
>C231011316
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4155876
4155952
+
Met
CAT
-
¡û
>C231011318
AP025282
Gammaproteobacteria
Aliamphritea ceti KCTC 42154 [AP025282]
4156069
4156145
+
Met
CAT
-
¡û
>C231011394
AP025283
Gammaproteobacteria
Aliamphritea spongicola JCM 16668 [AP025283]
3849823
3849899
+
Met
CAT
-
¡û
>C231011472
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4195149
4195225
+
Met
CAT
-
¡û
>C231011474
AP025284
Gammaproteobacteria
Amphritea atlantica JCM 14776 [AP025284]
4195358
4195434
+
Met
CAT
-
¡û
>C231019765
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3351905
3351981
+
Met
CAT
-
¡û
>C231019767
AP025761
Gammaproteobacteria
Amphritea japonica JCM 14782 [AP025761]
3352189
3352265
+
Met
CAT
-
¡û
>W1710551427
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
56797
56873
+
Met
CAT
[ENA]
¡û
>W1710551429
FOGB01000010
Gammaproteobacteria
Amphritea atlantica [FOGB]
57006
57082
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK