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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161519 (14 seq.)
>W131182117
ARQC01000012
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
3079
3153
+
Lys
TTT
[ENA]
¡û
>C024116
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2877352
2877425
+
Lys
TTT
[Ensembl]
¡û
>WENV170008857
APHM01010997
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1096
1022
-
Lys
TTT
[ENA]
¢þ
>C181192105
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2922088
2922162
+
Lys
TTT
-
¡û
>C191072369
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3093511
3093585
+
Lys
TTT
-
¡û
>C191072413
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2913406
2913480
+
Lys
TTT
-
¡û
>C191072459
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2992790
2992864
+
Lys
TTT
-
¡û
>C191072503
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2853631
2853705
+
Lys
TTT
-
¡û
>C191072548
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2942758
2942832
+
Lys
TTT
-
¡û
>W1910870035
NCQX01000006
Rhodothermota
Salinibacter ruber SP273 [NCQX]
8527
8453
-
Lys
TTT
[ENA]
¡û
>W1910870093
NCQY01000020
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
398489
398413
-
Lys
TTT
[ENA]
¡û
>W1910870141
NCQZ01000029
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
13289
13213
-
Lys
TTT
[ENA]
¡û
>W1910870204
NCRA01000062
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
6559
6635
+
Lys
TTT
[ENA]
¡û
>C131018235
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2955664
2955738
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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