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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162262 (59 seq.)
>W1710893212
LNEN01000271
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1833
1909
+
Ala
GGC
[ENA]
¡û
>W1710894202
LNFR01000025
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
32896
32820
-
Ala
GGC
[ENA]
¡û
>W131169926
ARFD01000011
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
10786
10709
-
Ala
GGC
[ENA]
¡û
>C171104439
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3559063
3559139
+
Ala
GGC
-
¡û
>W131169910
ARFC01000022
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
18074
18150
+
Ala
GGC
[ENA]
¡û
>W131220025
ATZA01000026
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
59506
59580
+
Ala
GGC
[ENA]
¡û
>WENV016696
AACY020468431
Marine microbial communities from Global Ocean Sampling (GOS)
1407
1485
+
Ala
GGC
[ENA]
>WENV180694210
OCZS012078959
[OCZS] soil metagenome; soil
157
83
-
Ala
GGC
[ENA]
¡û
>WENV181193229
OEPS011638917
[OEPS] soil metagenome; soil
106
32
-
Ala
GGC
[ENA]
¡û
>WENV183725481
PJQF01000137
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
12507
12433
-
Ala
GGC
[ENA]
¡û
>WENV170711960
LNFM01008659
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7668
7592
-
Ala
GGC
[ENA]
¡û
>WENV170713033
LNFM01022597
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5590
5514
-
Ala
GGC
[ENA]
¡û
>WENV170714882
LNFM01111444
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
612
688
+
Ala
GGC
[ENA]
¡û
>WENV170998626
MWWJ01061606
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
174
250
+
Ala
GGC
[ENA]
¡û
>WENV171003863
NNBV01002683
[NNBV] plant metagenome; symbiotic tissue sample KVS11
2670
2746
+
Ala
GGC
[ENA]
¡û
>C181113148
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
546142
546068
-
Ala
GGC
-
¡û
>W09109924
ABUR01000011
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
156622
156698
+
Ala
GGC
[ENA]
¡û
>W1910129042
BHXQ01000003
Bacteroidota
Cytophagaceae bacterium Ys [BHXQ]
642535
642609
+
Ala
GGC
[ENA]
¡û
>W1911497262
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
509985
510059
+
Ala
GGC
[ENA]
¡û
>W1810364378
PVTE01000011
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
209368
209442
+
Ala
GGC
[ENA]
¡û
>W1810692104
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
2448556
2448482
-
Ala
GGC
[ENA]
¡û
>W1810701996
QMFY01000006
Bacteroidota
Pseudochryseolinea flava SDU1-6 [QMFY]
321723
321649
-
Ala
GGC
[ENA]
¡û
>W1810789478
QRGR01000001
Bacteroidota
Pontibacter diazotrophicus H4X [QRGR]
174963
174888
-
Ala
GGC
[ENA]
¡û
>C151068605
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
1692612
1692688
+
Ala
GGC
[Ensembl]
¡û
>W2010081782
BHXQ01000003
Bacteroidota
Cytophagaceae bacterium Ys [BHXQ]
642535
642609
+
Ala
GGC
[ENA]
¡û
>W2010369851
CAHJWG010000006
Bacteroidota
Sphingobacteriaceae bacterium [CAHJWG]
105283
105357
+
Ala
GGC
[ENA]
¡û
>W2010451664
JAAEAA010000004
Bacteroidota
Pontibacter sp. BT213 [JAAEAA]
161056
161130
+
Ala
GGC
[ENA]
¡û
>W2010468901
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
1469918
1469844
-
Ala
GGC
[ENA]
¡û
>W2010471341
JAAGWD010000004
Bacteroidota
Pontibacter sp. BT327 [JAAGWD]
307639
307565
-
Ala
GGC
[ENA]
¡û
>W2010596628
JABFCR010000018
Bacteroidota
Mucilaginibacter sp. S1162 [JABFCR]
1446
1372
-
Ala
GGC
[ENA]
¡û
>W2010603032
JABGNA010000005
Bacteroidota
Mucilaginibacter sp. SG564 [JABGNA]
405905
405980
+
Ala
GGC
[ENA]
¡û
>W2010605075
JABKAU010000034
Bacteroidota
Hymenobacter sp. P5342 [JABKAU]
21598
21672
+
Ala
GGC
[ENA]
¡û
>W2010605076
JABKAU010000034
Bacteroidota
Hymenobacter sp. P5342 [JABKAU]
21708
21782
+
Ala
GGC
[ENA]
¡û
>W2011158166
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
509985
510059
+
Ala
GGC
[ENA]
¡û
>W2012412166
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
2448556
2448482
-
Ala
GGC
[ENA]
¡û
>W2012412201
WPIN01000019
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
19989
19915
-
Ala
GGC
[ENA]
¡û
>W2110056145
BNHL01000001
Bacteroidota
Cytophagales bacterium WSM2-2 [BNHL]
2993824
2993750
-
Ala
GGC
[ENA]
¡û
>W2110283022
JACXAA010000003
Bacteroidota
Spirosoma validum BT704 [JACXAA]
755692
755766
+
Ala
GGC
[ENA]
¡û
>W2110517422
JAFMYW010000006
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
26790
26715
-
Ala
GGC
[ENA]
¡û
>W2110598270
JAHESC010000003
Bacteroidota
Fulvivirgaceae bacterium PWU37 [JAHESC]
119440
119366
-
Ala
GGC
[ENA]
¡û
>W2110598338
JAHESD010000073
Bacteroidota
Fulvivirgaceae bacterium PWU20 [JAHESD]
26120
26194
+
Ala
GGC
[ENA]
¡û
>W2110598357
JAHESE010000003
Bacteroidota
Fulvivirgaceae bacterium PWU5 [JAHESE]
121786
121860
+
Ala
GGC
[ENA]
¡û
>W2110598422
JAHESF010000037
Bacteroidota
Fulvivirgaceae bacterium PWU4 [JAHESF]
12091
12165
+
Ala
GGC
[ENA]
¡û
>W2110659422
JAHXBU010000006
Bacteroidota
Cesiribacter sp. SM1 [JAHXBU]
69544
69618
+
Ala
GGC
[ENA]
¡û
>C201250749
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
3017007
3017081
+
Ala
GGC
-
¡û
>C211124434
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
1044726
1044800
+
Ala
GGC
-
¡û
>C231129799
CP073016
Bacteroidota
Chryseotalea sp. WA131a [CP073016]
2555274
2555200
-
Ala
GGC
-
¡û
>W2110772283
VFIA01000011
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
34966
34892
-
Ala
GGC
[ENA]
¡û
>W2110772319
VFIC01000009
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
34966
34892
-
Ala
GGC
[ENA]
¡û
>C241057060
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
2334293
2334367
+
Ala
GGC
-
¡û
>C241140679
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
7392454
7392528
+
Ala
GGC
-
¡û
>C10111756
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
838530
838606
+
Ala
GGC
[Ensembl]
¡û
>C161003239
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
3234796
3234870
+
Ala
GGC
[Ensembl]
¡û
>WENV057799
AACY023306978
Marine microbial communities from Global Ocean Sampling (GOS)
1012
1090
+
Ala
GGC
[ENA]
>W1610753478
LNEN01000271
Bacteroidota
Cytophagales bacterium Ga0077538 [LNEN]
1833
1909
+
Ala
GGC
[ENA]
¡û
>W1610754468
LNFR01000025
Bacteroidota
Bacteroidetes bacterium OLB12 [LNFR]
32896
32820
-
Ala
GGC
[ENA]
¡û
>W1710513662
FNAI01000006
Bacteroidota
Mucilaginibacter pineti [FNAI]
68425
68351
-
Ala
GGC
[ENA]
¡û
>W1710558196
FOLQ01000006
Bacteroidota
Spirosoma endophyticum [FOLQ]
215218
215144
-
Ala
GGC
[ENA]
¡û
>W1710604249
FUZU01000005
Bacteroidota
Ohtaekwangia koreensis [FUZU]
324185
324109
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK