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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163042 (43 seq.)
>A171000254
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
59676
59603
-
Gly
CCC
-
¡û
>A171003410
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
24630
24557
-
Gly
CCC
-
¡û
>A171003435
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
12071
11998
-
Gly
CCC
-
¡û
>A171005906
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
150923
150996
+
Gly
CCC
-
¡û
>A171006025
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1790634
1790707
+
Gly
CCC
-
¡û
>WENV180053072
MPLU02344442
[MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter
2921
2848
-
Gly
CCC
[ENA]
¡û
>WENV180053427
MPLV02015361
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
49892
49965
+
Gly
CCC
[ENA]
¡û
>WENV180059379
MPLX02109143
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
48231
48158
-
Gly
CCC
[ENA]
¡û
>WENV180088943
MPMF02055831
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
146
73
-
Gly
CCC
[ENA]
¡û
>WENV183794857
PVBE010128416
[PVBE] marine metagenome; water
30202
30129
-
Gly
CCC
[ENA]
¡û
>WENV170227560
CEQF01103270
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
233
160
-
Gly
CCC
[ENA]
¡û
>WENV170301048
CESG01236135
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2120
2047
-
Gly
CCC
[ENA]
¡û
>WENV170396029
CEUC01150961
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
15806
15733
-
Gly
CCC
[ENA]
¡û
>WENV170625914
FUWD013209503
[FUWD] metagenome; unknown
235
162
-
Gly
CCC
[ENA]
¡û
>WENV170701524
LKGT01010310
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
90
14
-
Gly
CCC
[ENA]
¡û
>WENV170878274
MDTC01073154
[MDTC] marine metagenome; seawater
25875
25802
-
Gly
CCC
[ENA]
¡û
>W1910126246
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
169397
169470
+
Gly
CCC
[ENA]
¡û
>W1910572968
JNVL01000025
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
2026
1953
-
Gly
CCC
[ENA]
¡û
>W1910572980
JOKN01000001
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
66230
66157
-
Gly
CCC
[ENA]
¡û
>W1910573226
JOSY01000077
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
112391
112318
-
Gly
CCC
[ENA]
¡û
>W1910573233
JOSZ01000009
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ]
16492
16565
+
Gly
CCC
[ENA]
¡û
>W1910573286
JOTD01000018
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
22547
22474
-
Gly
CCC
[ENA]
¡û
>W1910573287
JOTD01000019
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
2070
1997
-
Gly
CCC
[ENA]
¡û
>A241001112
CP026993
Nitrososphaerota
Nitrosopumilus cobalaminigenes HCA1 [CP026993]
78843
78770
-
Gly
CCC
-
¡û
>A241001137
CP026994
Nitrososphaerota
Nitrosopumilus oxyclinae HCE1 [CP026994]
82781
82708
-
Gly
CCC
-
¡û
>A241001165
CP026995
Nitrososphaerota
Nitrosopumilus ureiphilus PS0 [CP026995]
57971
57898
-
Gly
CCC
-
¡û
>W2010080330
BGKI01000012
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
169397
169470
+
Gly
CCC
[ENA]
¡û
>W2010758626
JNVL01000025
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL]
2026
1953
-
Gly
CCC
[ENA]
¡û
>W2010758638
JOKN01000001
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
66230
66157
-
Gly
CCC
[ENA]
¡û
>W2010758884
JOSY01000077
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
112391
112318
-
Gly
CCC
[ENA]
¡û
>W2010758891
JOSZ01000009
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ]
16492
16565
+
Gly
CCC
[ENA]
¡û
>W2010758944
JOTD01000018
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
22547
22474
-
Gly
CCC
[ENA]
¡û
>W2010758945
JOTD01000019
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
2070
1997
-
Gly
CCC
[ENA]
¡û
>W2011230938
PXYC01000001
Nitrososphaerota
Nitrosopumilus sp. b2 [PXYC]
291976
292049
+
Gly
CCC
[ENA]
¡û
>W2011230977
PXYD01000007
Nitrososphaerota
Nitrosopumilus sp. b3 [PXYD]
10708
10635
-
Gly
CCC
[ENA]
¡û
>W2011955600
UYNY01000046
Nitrososphaerota
Nitrosopumilaceae archaeon [UYNY]
22434
22507
+
Gly
CCC
[ENA]
¡û
>W1610000544
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
965552
965479
-
Gly
CCC
[ENA]
¡û
>W1610005406
AJVI01000005
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
12030
11954
-
Gly
CCC
[ENA]
¡û
>W1610005426
AJVJ01000014
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
12033
11957
-
Gly
CCC
[ENA]
¡û
>W1610005460
AJVJ01000044
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
12011
11938
-
Gly
CCC
[ENA]
¡û
>WENV068915
AACY023744269
Marine microbial communities from Global Ocean Sampling (GOS)
1145
1221
+
Gly
CCC
[ENA]
>W1610599349
LFLC01000032
Nitrososphaerota
Nitrosopumilus sp. LS_AOA [LFLC]
43829
43756
-
Gly
CCC
[ENA]
¡û
>W1610617245
LGTD01000242
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
1004
931
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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