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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166851 (71 seq.)
>W1710869889
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
380304
380230
-
Met
CAT
[ENA]
¡û
>W1710870602
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2465912
2465836
-
Met
CAT
[ENA]
¡û
>W1710871349
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
961653
961727
+
Met
CAT
[ENA]
¡û
>W1710872727
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
964656
964730
+
Met
CAT
[ENA]
¡û
>W1710873145
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
634278
634354
+
Met
CAT
[ENA]
¡û
>W1710876055
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1163524
1163598
+
Met
CAT
[ENA]
¡û
>W1710876256
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
499773
499697
-
Met
CAT
[ENA]
¡û
>W1710876893
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
440555
440479
-
Met
CAT
[ENA]
¡û
>W1710878108
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
964472
964546
+
Met
CAT
[ENA]
¡û
>W131235241
AULK01000001
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
400815
400741
-
Met
CAT
[ENA]
¡û
>W1711461334
MJGS01000001
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
446500
446426
-
Met
CAT
[ENA]
¡û
>C191130412
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
1937995
1938069
+
Met
CAT
-
¡û
>W1810860854
QTTL01000003
Actinomycetota
Agromyces sp. OV429 [QTTL]
27482
27408
-
Met
CAT
[ENA]
¡û
>SRA1014953
SRR023845.395622
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
82
8
-
Met
CAT
[SRA]
>SRA1016337
SRR023846.457634
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
222
148
-
Met
CAT
[SRA]
>W2010099865
BJUV01000004
Actinomycetota
Frigoribacterium faeni NBRC 103066 [BJUV]
24850
24774
-
Ile2
CAT
[ENA]
¡û
>W2010310559
CABWMD010000025
Actinomycetota
Frigoribacterium sp. 9N [CABWMD]
17072
17146
+
Ile2
CAT
[ENA]
¡û
>W2010534190
JAAOYV010000001
Actinomycetota
Frigoribacterium endophyticum AS3.20 [JAAOYV]
1044798
1044872
+
Ile2
CAT
[ENA]
¡û
>W2010534241
JAAOYW010000001
Actinomycetota
Frigoribacterium faeni AS3.2 [JAAOYW]
354040
353966
-
Ile2
CAT
[ENA]
¡û
>W2010609681
JABMLB010000001
Actinomycetota
Frigoribacterium sp. VKM Ac-2860 [JABMLB]
506131
506057
-
Ile2
CAT
[ENA]
¡û
>W2010610802
JABRPK010000001
Actinomycetota
Frigoribacterium sp. VKM Ac-2836 [JABRPK]
911850
911924
+
Ile2
CAT
[ENA]
¡û
>W2010691846
JACGWW010000001
Actinomycetota
Frigoribacterium faeni DSM 10309 [JACGWW]
1017670
1017746
+
Ile2
CAT
[ENA]
¡û
>W2011418012
RHHB01000006
Actinomycetota
Agromyces sp. SJ-23 [RHHB]
66826
66750
-
Ile2
CAT
[ENA]
¡û
>W2011433983
RJKU01000001
Actinomycetota
Frigoribacterium sp. PhB107 [RJKU]
558170
558096
-
Ile2
CAT
[ENA]
¡û
>W2011448520
RKIC01000009
Actinomycetota
Frigoribacterium sp. PhB24 [RKIC]
522376
522302
-
Ile2
CAT
[ENA]
¡û
>W2011448571
RKID01000001
Actinomycetota
Frigoribacterium sp. PhB118 [RKID]
530894
530820
-
Ile2
CAT
[ENA]
¡û
>W2011448613
RKIE01000001
Actinomycetota
Frigoribacterium sp. PhB160 [RKIE]
1397976
1398051
+
Ile2
CAT
[ENA]
¡û
>W2011539481
SCNU01000012
Actinomycetota
Microbacteriaceae bacterium 3R27F9-B [SCNU]
25055
25129
+
Ile2
CAT
[ENA]
¡û
>W2011549485
SDPL01000050
Actinomycetota
Agromyces binzhouensis CGMCC 4.7180 [SDPL]
4638
4712
+
Ile2
CAT
[ENA]
¡û
>W2011549570
SDPN01000012
Actinomycetota
Agromyces albus DSM 15934 [SDPN]
23718
23643
-
Ile2
CAT
[ENA]
¡û
>W2011654571
SOBE01000001
Actinomycetota
Frigoribacterium sp. PhB116 [SOBE]
563013
562939
-
Ile2
CAT
[ENA]
¡û
>W2012105187
VOLO01000001
Actinomycetota
Frigoribacterium sp. ACAM 257 [VOLO]
830128
830202
+
Ile2
CAT
[ENA]
¡û
>W2012227801
WBIN01000021
Actinomycetota
Agromyces allii JCM 13584 [WBIN]
13261
13335
+
Ile2
CAT
[ENA]
¡û
>W2012227804
WBIO01000001
Actinomycetota
Agromyces aureus JCM 32431 [WBIO]
257236
257162
-
Ile2
CAT
[ENA]
¡û
>W2012227945
WBIR01000002
Actinomycetota
Agromyces salentinus JCM 14323 [WBIR]
189328
189254
-
Ile2
CAT
[ENA]
¡û
>W2012228004
WBIS01000001
Actinomycetota
Agromyces terreus JCM 14323 [WBIS]
1095253
1095177
-
Ile2
CAT
[ENA]
¡û
>W2012357129
WKJD01000004
Actinomycetota
Agromyces sp. Q22 [WKJD]
169025
169099
+
Ile2
CAT
[ENA]
¡û
>W2012380293
WMLB01000019
Actinomycetota
Agromyces bracchium JCM 11433 [WMLB]
68658
68583
-
Ile2
CAT
[ENA]
¡û
>W2110290205
JACYTX010000002
Actinomycetota
Frigoribacterium sp. CFBP 8766 CFBP8766 [JACYTX]
572158
572084
-
Ile2
CAT
[ENA]
¡û
>W2110290398
JACYUB010000002
Actinomycetota
Frigoribacterium sp. CFBP 8751 CFBP8751 [JACYUB]
689175
689249
+
Ile2
CAT
[ENA]
¡û
>W2110290657
JACYUH010000002
Actinomycetota
Frigoribacterium sp. CFBP 8759 CFBP8759 [JACYUH]
489213
489287
+
Ile2
CAT
[ENA]
¡û
>W2110290804
JACYUO010000001
Actinomycetota
Frigoribacterium sp. CFBP 8754 CFBP8754 [JACYUO]
889621
889695
+
Ile2
CAT
[ENA]
¡û
>W2110290968
JACYUR010000001
Actinomycetota
Frigoribacterium sp. CFBP 13729 CFBP13729 [JACYUR]
559698
559624
-
Ile2
CAT
[ENA]
¡û
>W2110291645
JACYVH010000001
Actinomycetota
Frigoribacterium sp. CFBP 13712 CFBP13712 [JACYVH]
14339
14265
-
Ile2
CAT
[ENA]
¡û
>W2110291763
JACYVL010000002
Actinomycetota
Frigoribacterium sp. CFBP 13707 CFBP13707 [JACYVL]
692345
692419
+
Ile2
CAT
[ENA]
¡û
>W2110329545
JADKSD010000001
Actinomycetota
Frigoribacterium sp. VKM Ac-1396 [JADKSD]
546466
546391
-
Ile2
CAT
[ENA]
¡û
>W2110329595
JADKSE010000001
Actinomycetota
Frigoribacterium sp. VKM Ac-2530 [JADKSE]
576324
576250
-
Ile2
CAT
[ENA]
¡û
>W2110499334
JAFIBM010000001
Actinomycetota
Frigoribacterium sp. PvP032 [JAFIBM]
1847321
1847395
+
Ile2
CAT
[ENA]
¡û
>W2110499581
JAFIBR010000001
Actinomycetota
Frigoribacterium sp. PvP121 [JAFIBR]
2165114
2165188
+
Ile2
CAT
[ENA]
¡û
>W2110543057
JAGGPF010000006
Actinomycetota
Agromyces sp. ISL-38 [JAGGPF]
100935
101009
+
Ile2
CAT
[ENA]
¡û
>W2110543203
JAGGPI010000007
Actinomycetota
Streptomyces sp. ISL-90 [JAGGPI]
127963
127889
-
Ile2
CAT
[ENA]
¡û
>C211060468
CP043650
Actinomycetota
Frigoribacterium sp. NBH87 [CP043650]
130811
130885
+
Ile2
CAT
-
¡û
>C231247005
CP087879
Actinomycetota
Agromyces marinus DSM 26151 [CP087879]
1472615
1472689
+
Ile2
CAT
-
¡û
>C241011966
AP027734
Actinomycetota
Agromyces marinus NBRC 109019 [AP027734]
296443
296369
-
Ile2
CAT
-
¡û
>C241012078
AP027737
Actinomycetota
Agromyces mangrovi NBRC 112812 [AP027737]
3339832
3339906
+
Ile2
CAT
-
¡û
>W2130018284
JACYNS010000147
Actinomycetota
Frigoribacterium sp. CFBP 13605 CFBP13605 [JACYNS]
4293
4367
+
Ile2
CAT
[ENA]
¡û
>C241306525
CP133018
Actinomycetota
Agromyces protaetiae W11 [CP133018]
2266440
2266366
-
Ile2
CAT
-
¡û
>W1511509355
JXQZ01000001
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
45627
45701
+
Met
CAT
[ENA]
¡û
>C161063214
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
2512252
2512178
-
Met
CAT
[Ensembl]
¡û
>W1610620615
LHOZ01000067
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
45676
45750
+
Met
CAT
[ENA]
¡û
>W1610732235
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
380304
380230
-
Met
CAT
[ENA]
¡û
>W1610732948
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2465912
2465836
-
Met
CAT
[ENA]
¡û
>W1610733695
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
961653
961727
+
Met
CAT
[ENA]
¡û
>W1610735073
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
964656
964730
+
Met
CAT
[ENA]
¡û
>W1610735491
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
634278
634354
+
Met
CAT
[ENA]
¡û
>W1610738401
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
1163524
1163598
+
Met
CAT
[ENA]
¡û
>W1610738602
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
499773
499697
-
Met
CAT
[ENA]
¡û
>W1610739239
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
440555
440479
-
Met
CAT
[ENA]
¡û
>W1610740454
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
964472
964546
+
Met
CAT
[ENA]
¡û
>W1710575400
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2655831
2655755
-
Met
CAT
[ENA]
¡û
>W1710748309
LHOZ01000067
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
45676
45750
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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