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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16797 (30 seq.)
>W1710787508
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
96969
97059
+
Ser
TGA
[ENA]
¡û
>W131155590
AQOS01000002
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
14109
14019
-
Ser
TGA
[ENA]
¡û
>W131177910
ARLD01000083
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
40480
40390
-
Ser
TGA
[ENA]
¡û
>W131231952
AUIW01000004
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
195225
195315
+
Ser
TGA
[ENA]
¡û
>W131167498
ARDI01000002
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
203208
203298
+
Ser
TGA
[ENA]
¡û
>W131218079
ATXJ01000001
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
143381
143291
-
Ser
TGA
[ENA]
¡û
>C025906
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1278549
1278459
-
Ser
TGA
[Ensembl]
¡û
>C025944
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1602670
1602580
-
Ser
TGA
[Ensembl]
¡û
>WENV180014152
FPIC01069798
[FPIC] soil metagenome; Soil
2
92
+
Ser
TGA
[ENA]
¢þ
>WENV180015134
FQKF010349170
[FQKF] soil metagenome; Soil
183
93
-
Ser
TGA
[ENA]
¢þ
>W141080499
ATNI01000025
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
41976
41886
-
Ser
TGA
[ENA]
¡û
>WENV181285651
OFGS01007752
[OFGS] hot springs metagenome; Water and soil
140
50
-
Ser
TGA
[ENA]
¢þ
>C191190013
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1957271
1957361
+
Ser
TGA
-
¡û
>W141818265
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1623766
1623676
-
Ser
TGA
[ENA]
¡û
>W141820365
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1947274
1947184
-
Ser
TGA
[ENA]
¡û
>W1911578820
PELL01000392
Deinococcota
Thermus scotoductus 39_S39 [PELL]
2026
1936
-
Ser
TGA
[ENA]
¡û
>W1911578830
PELM01000029
Deinococcota
Thermus scotoductus 38_S38 [PELM]
4878
4968
+
Ser
TGA
[ENA]
¡û
>W1911579403
PELY01000017
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1266
1176
-
Ser
TGA
[ENA]
¡û
>W1911579829
PEMH01000016
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
2014
1924
-
Ser
TGA
[ENA]
¡û
>W1810268464
PRDA01000076
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
1887
1977
+
Ser
TGA
[ENA]
¡û
>W1810605089
QGMX01000003
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
240357
240447
+
Ser
TGA
[ENA]
¡û
>C11116325
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
2137203
2137113
-
Ser
TGA
[Ensembl]
¡û
>C11123063
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
2234942
2234852
-
Ser
TGA
[Ensembl]
¡û
>C11123197
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1633283
1633193
-
Ser
TGA
[Ensembl]
¡û
>C121006389
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
341474
341564
+
Ser
TGA
[Ensembl]
¡û
>C121009724
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
306398
306488
+
Ser
TGA
[Ensembl]
¡û
>C161067086
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
396944
397034
+
Ser
TGA
[Ensembl]
¡û
>W121056045
AIJQ01000016
Deinococcota
Thermus parvatiensis RL [AIJQ]
30572
30482
-
Ser
TGA
[ENA]
¡û
>C131002382
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
66186
66276
+
Ser
TGA
[Ensembl]
¡û
>W1610651363
LJJR01000004
Deinococcota
Thermus scotoductus [LJJR]
96969
97059
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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