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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171201 (114 seq.)
>W1710870146
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
693927
693851
-
His
GTG
[ENA]
¡û
>W1710870382
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
80461
80537
+
His
GTG
[ENA]
¡û
>W1710870458
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
325419
325343
-
His
GTG
[ENA]
¡û
>W1710870864
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
356235
356311
+
His
GTG
[ENA]
¡û
>W1710870950
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
229265
229341
+
His
GTG
[ENA]
¡û
>W1710871182
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
360739
360663
-
His
GTG
[ENA]
¡û
>W1710871231
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1466873
1466949
+
His
GTG
[ENA]
¡û
>W1710872281
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
664063
664139
+
His
GTG
[ENA]
¡û
>W1710876762
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
164887
164811
-
His
GTG
[ENA]
¡û
>W1710877196
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
626014
626090
+
His
GTG
[ENA]
¡û
>W1710894015
LNFI01000001
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
53667
53591
-
His
GTG
[ENA]
¡û
>C171030405
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
3716810
3716734
-
His
GTG
-
¡û
>WENV180016146
FSUD01000646
[FSUD] metagenome; soil
6332
6408
+
His
GTG
[ENA]
¡û
>WENV180019242
FTBP01000085
[FTBP] metagenome; soil
2021
2097
+
His
GTG
[ENA]
¡û
>WENV180020220
FTCZ01000071
[FTCZ] metagenome; soil
79
3
-
His
GTG
[ENA]
¡û
>WENV180026970
FTIV01016954
[FTIV] metagenome; soil
108
32
-
His
GTG
[ENA]
¡û
>WENV180105020
OAPD01001710
[OAPD] marine metagenome; 2010
1616
1540
-
His
GTG
[ENA]
¡û
>WENV180108008
OAPH01029587
[OAPH] marine metagenome; seawater
392
316
-
His
GTG
[ENA]
¡û
>WENV181374620
OFQY01012528
[OFQY] wastewater metagenome; Exp Tend VB 10WW
1230
1154
-
His
GTG
[ENA]
¡û
>WENV181378207
OFRA01099167
[OFRA] wastewater metagenome; Lake Maggiore Verbania
345
421
+
His
GTG
[ENA]
¡û
>WENV181379294
OFRD01000335
[OFRD] wastewater metagenome; Exp Tend CN 100WW
12019
11943
-
His
GTG
[ENA]
¡û
>WENV181385502
OFRI01103939
[OFRI] wastewater metagenome; Exp Tend VB 90WW
250
174
-
His
GTG
[ENA]
¡û
>WENV181386128
OFRL01000779
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
6229
6153
-
His
GTG
[ENA]
¡û
>WENV170121428
CENM01009755
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
299
-
His
GTG
[ENA]
¡û
>WENV170565008
CZQE01000396
[CZQE] hydrothermal vent metagenome; ocean water
4076
4152
+
His
GTG
[ENA]
¡û
>WENV170709889
LNFM01000858
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18314
18390
+
His
GTG
[ENA]
¡û
>C191154781
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1583444
1583368
-
His
GTG
-
¡û
>C191163762
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
3272204
3272128
-
His
GTG
-
¡û
>W141801045
JPDP01000692
Alphaproteobacteria
Sphingomonas sp. STIS6.2 [JPDP]
200
276
+
His
GTG
[ENA]
¡û
>W1810463424
PZZN01000002
Alphaproteobacteria
Sphingomonas aerolata NW12 [PZZN]
845884
845960
+
His
GTG
[ENA]
¡û
>W1810476696
QAOF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
843398
843474
+
His
GTG
[ENA]
¡û
>W1810476752
QAOG01000002
Alphaproteobacteria
Sphingomonas aurantiaca MA101b [QAOG]
538876
538952
+
His
GTG
[ENA]
¡û
>W1810486900
QAYE01000007
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
202658
202582
-
His
GTG
[ENA]
¡û
>SRA1014312
SRR023845.85094
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
91
-
His
GTG
[SRA]
>SRA1014547
SRR023845.193412
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
104
28
-
His
GTG
[SRA]
>SRA1014635
SRR023845.235315
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
220
+
His
GTG
[SRA]
>SRA1014684
SRR023845.262927
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
144
220
+
His
GTG
[SRA]
>SRA1015041
SRR023845.433197
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
200
276
+
His
GTG
[SRA]
>SRA1015082
SRR023845.453781
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
239
+
His
GTG
[SRA]
>SRA1015139
SRR023845.475151
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
162
238
+
His
GTG
[SRA]
>SRA1015544
SRR023846.105128
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
9
-
His
GTG
[SRA]
>SRA1015715
SRR023846.168087
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
90
-
His
GTG
[SRA]
>SRA1015928
SRR023846.267067
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
261
185
-
His
GTG
[SRA]
>SRA1015953
SRR023846.281476
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
90
-
His
GTG
[SRA]
>SRA1016157
SRR023846.372779
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
183
107
-
His
GTG
[SRA]
>C151073217
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
2645044
2644968
-
His
GTG
[Ensembl]
¡û
>W2010302914
CABVLI010000043
Alphaproteobacteria
Sphingomonas sp. EC-SD391 [CABVLI]
180870
180946
+
His
GTG
[ENA]
¡û
>W2010311816
CABWMY010000056
Alphaproteobacteria
Sphingomonas sp. T1 [CABWMY]
101589
101513
-
His
GTG
[ENA]
¡û
>W2010720840
JACIAP010000001
Alphaproteobacteria
Sphingomonas sp. BK481 [JACIAP]
578830
578906
+
His
GTG
[ENA]
¡û
>W2011354886
RAPZ01000011
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
364206
364282
+
His
GTG
[ENA]
¡û
>W2011404462
RCWT01000010
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
802595
802519
-
His
GTG
[ENA]
¡û
>W2011404769
RCWY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
808138
808062
-
His
GTG
[ENA]
¡û
>W2011407556
RCZC01000002
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
416604
416528
-
His
GTG
[ENA]
¡û
>W2011407970
RCZK01000006
Alphaproteobacteria
Sphingomonas oligophenolica S5.1 [RCZK]
156775
156699
-
His
GTG
[ENA]
¡û
>W2011495070
RWKS01000004
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
136236
136160
-
His
GTG
[ENA]
¡û
>W2011536245
SCIN01000001
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
792713
792637
-
His
GTG
[ENA]
¡û
>W2011538860
SCNH01000003
Alphaproteobacteria
Sphingomonas sp. 3F27F9 [SCNH]
197596
197672
+
His
GTG
[ENA]
¡û
>W2011560383
SGIS01000002
Alphaproteobacteria
Sphingomonas sp. 3-7 [SGIS]
173213
173289
+
His
GTG
[ENA]
¡û
>W2011578903
SGXR01000004
Alphaproteobacteria
Sphingomonas sp. BK036 [SGXR]
495246
495322
+
His
GTG
[ENA]
¡û
>W2011619354
SLUY01000002
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
365187
365263
+
His
GTG
[ENA]
¡û
>W2011623864
SLXW01000005
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
27543
27467
-
His
GTG
[ENA]
¡û
>W2011624059
SLYA01000002
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
356517
356593
+
His
GTG
[ENA]
¡û
>W2011624192
SLYD01000005
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
259014
258938
-
His
GTG
[ENA]
¡û
>W2011624272
SLYF01000004
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
263180
263104
-
His
GTG
[ENA]
¡û
>W2011685883
SRXT01000006
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
110000
110076
+
His
GTG
[ENA]
¡û
>W2012106761
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
813593
813669
+
His
GTG
[ENA]
¡û
>W2110020673
BMDW01000009
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
47583
47659
+
His
GTG
[ENA]
¡û
>W2110051924
BNAQ01000001
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
396836
396760
-
His
GTG
[ENA]
¡û
>W2110243517
JACONT010000027
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
17536
17612
+
His
GTG
[ENA]
¡û
>W2110290220
JACYTY010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8765 CFBP8765 [JACYTY]
265250
265174
-
His
GTG
[ENA]
¡û
>W2110290272
JACYTZ010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 8764 CFBP8764 [JACYTZ]
1066320
1066244
-
His
GTG
[ENA]
¡û
>W2110291017
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
725907
725831
-
His
GTG
[ENA]
¡û
>W2110291814
JACYVM010000004
Alphaproteobacteria
Sphingomonas sp. CFBP 13706 CFBP13706 [JACYVM]
129523
129599
+
His
GTG
[ENA]
¡û
>W2110302300
JADBIA010000015
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
25562
25486
-
His
GTG
[ENA]
¡û
>W2110554387
JAGIOU010000001
Alphaproteobacteria
Sphingomonas sp. PvP018 [JAGIOU]
1352957
1352881
-
His
GTG
[ENA]
¡û
>C211140868
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
1253289
1253365
+
His
GTG
-
¡û
>C211140915
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
1563704
1563780
+
His
GTG
-
¡û
>C231230476
CP086594
Alphaproteobacteria
Sphingomonas radiodurans S9-5 [CP086594]
3398833
3398909
+
His
GTG
-
¡û
>C231401115
CP098401
Alphaproteobacteria
Sphingomonas sp. RMG20 [CP098401]
673901
673977
+
His
GTG
-
¡û
>C231406198
CP098762
Alphaproteobacteria
Sphingomonas aerolata PDD-32b-11 [CP098762]
3048656
3048580
-
His
GTG
-
¡û
>C231406637
CP098774
Alphaproteobacteria
Sphingomonas sp. QA11 [CP098774]
2215693
2215617
-
His
GTG
-
¡û
>C231441472
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
629957
630033
+
His
GTG
-
¡û
>C231463794
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
191445
191369
-
His
GTG
-
¡û
>C231536487
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
865193
865117
-
His
GTG
-
¡û
>C231620006
CP119314
Alphaproteobacteria
Sphingomonas sp. [CP119314]
1748154
1748078
-
His
GTG
-
¡û
>C241006600
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
1138656
1138580
-
His
GTG
-
¡û
>C241006652
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
1291670
1291594
-
His
GTG
-
¡û
>C241131777
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
1879487
1879411
-
His
GTG
-
¡û
>W1511352589
JROH01000077
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
1971
2047
+
His
GTG
[ENA]
¡û
>W1511357081
JRVI01000282
Alphaproteobacteria
Sphingomonas sp. Ant20 [JRVI]
1835
1911
+
His
GTG
[ENA]
¡û
>W1511361511
JSBN01000119
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
6525
6601
+
His
GTG
[ENA]
¡û
>W1511390143
JSXI01000025
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
10423
10499
+
His
GTG
[ENA]
¡û
>W121031782
AHHA01000037
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
111940
111864
-
His
GTG
[ENA]
¡û
>W121033222
AHIR01000006
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
387484
387408
-
His
GTG
[ENA]
¡û
>W121033292
AHIS01000095
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
171296
171220
-
His
GTG
[ENA]
¡û
>W121046821
AIDW01000020
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
55854
55778
-
His
GTG
[ENA]
¡û
>W1610076497
BCYU01000002
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
78720
78796
+
His
GTG
[ENA]
¡û
>W1610076639
BCYX01000002
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
172509
172433
-
His
GTG
[ENA]
¡û
>W1610732492
LMKH01000001
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
693927
693851
-
His
GTG
[ENA]
¡û
>W1610732728
LMKL01000007
Alphaproteobacteria
Sphingomonas sp. Leaf17 [LMKL]
80461
80537
+
His
GTG
[ENA]
¡û
>W1610732804
LMKN01000001
Alphaproteobacteria
Sphingomonas sp. Leaf20 [LMKN]
325419
325343
-
His
GTG
[ENA]
¡û
>W1610733066
LMKT01000001
Alphaproteobacteria
Sphingomonas sp. Leaf226 [LMKT]
407234
407310
+
His
GTG
[ENA]
¡û
>W1610733210
LMKW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
356235
356311
+
His
GTG
[ENA]
¡û
>W1610733296
LMKX01000009
Alphaproteobacteria
Sphingomonas sp. Leaf28 [LMKX]
229265
229341
+
His
GTG
[ENA]
¡û
>W1610733401
LMKZ01000018
Alphaproteobacteria
Sphingomonas sp. Leaf30 [LMKZ]
874347
874423
+
His
GTG
[ENA]
¡û
>W1610733528
LMLC01000003
Alphaproteobacteria
Sphingomonas sp. Leaf34 [LMLC]
360739
360663
-
His
GTG
[ENA]
¡û
>W1610733577
LMLD01000011
Alphaproteobacteria
Sphingomonas sp. Leaf38 [LMLD]
1466873
1466949
+
His
GTG
[ENA]
¡û
>W1610734627
LMLW01000001
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
664063
664139
+
His
GTG
[ENA]
¡û
>W1610739108
LMPM01000003
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
164887
164811
-
His
GTG
[ENA]
¡û
>W1610739542
LMPX01000001
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
626014
626090
+
His
GTG
[ENA]
¡û
>W1610754281
LNFI01000001
Alphaproteobacteria
Sphingomonadales bacterium Ga0077557 [LNFI]
53667
53591
-
His
GTG
[ENA]
¡û
>W1710074186
BCYU01000002
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
78720
78796
+
His
GTG
[ENA]
¡û
>W1710074328
BCYX01000002
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
172509
172433
-
His
GTG
[ENA]
¡û
>W1710571499
FOVZ01000001
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
504791
504867
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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