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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.171800 (49 seq.)
>W1710866452
LMHM01000007
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
3550
3474
-
Ile
GAT
[ENA]
¡û
>WENV180695724
OCZS013880685
[OCZS] soil metagenome; soil
77
1
-
Ile
GAT
[ENA]
¡û
>WENV181167215
OEIU01014196
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
219
295
+
Ile
GAT
[ENA]
¡û
>WENV182554016
OJCS01005125
[OJCS] seawater metagenome; Sea water
744
668
-
Ile
GAT
[ENA]
¡û
>WENV182568564
OJEV01004078
[OJEV] seawater metagenome; Sea water
705
629
-
Ile
GAT
[ENA]
¡û
>WENV182589679
OJIF01003197
[OJIF] seawater metagenome; Sea water
194
270
+
Ile
GAT
[ENA]
¡û
>W141282855
JAJA01000029
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
87419
87343
-
Ile
GAT
[ENA]
¡û
>WENV183055464
OLHC01003277
[OLHC] seawater metagenome; Sea water
350
274
-
Ile
GAT
[ENA]
¡û
>WENV183749639
PPFU01194497
[PPFU] hypolithon metagenome; Antarctic Hypolithon
307
231
-
Ile
GAT
[ENA]
¡û
>WENV170009919
APMI01005070
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
84
8
-
Ile
GAT
[ENA]
¡û
>WENV170018854
BBPD01001539
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2031
2107
+
Ile
GAT
[ENA]
¡û
>WENV170019710
BBPE01000173
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3381
3305
-
Ile
GAT
[ENA]
¡û
>WENV170705412
LNAO01000205
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8415
8339
-
Ile
GAT
[ENA]
¡û
>WENV170708229
LNAP01060931
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
837
761
-
Ile
GAT
[ENA]
¡û
>WENV170996332
MWWF01220023
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
365
289
-
Ile
GAT
[ENA]
¡û
>C181081784
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
461723
461799
+
Ile
GAT
-
¡û
>C181081786
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
1067872
1067948
+
Ile
GAT
-
¡û
>C191145528
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
339594
339670
+
Ile
GAT
-
¡û
>C191145530
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
465728
465804
+
Ile
GAT
-
¡û
>W2011410635
RDQN01000022
Gammaproteobacteria
Pseudoxanthomonas spadix DSM 18855 [RDQN]
3306
3230
-
Ile
GAT
[ENA]
¡û
>W2011528119
SAWZ01000021
Gammaproteobacteria
Pseudoxanthomonas sp. GSS15 [SAWZ]
2201
2277
+
Ile
GAT
[ENA]
¡û
>W2110050411
BMZL01000001
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [BMZL]
1669223
1669147
-
Ile
GAT
[ENA]
¡û
>W2110050414
BMZL01000001
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [BMZL]
1327328
1327252
-
Ile
GAT
[ENA]
¡û
>W2110285185
JACXXL010000097
Gammaproteobacteria
Lysobacter capsici VKM B-2533 [JACXXL]
4275
4199
-
Ile
GAT
[ENA]
¡û
>W2110561186
JAGKTD010000047
Gammaproteobacteria
Pseudoxanthomonas spadix 18855 [JAGKTD]
3306
3230
-
Ile
GAT
[ENA]
¡û
>W2110662247
JAHXYJ010000068
Gammaproteobacteria
Lysobacter gummosus EVS02B [JAHXYJ]
3603
3527
-
Ile
GAT
[ENA]
¡û
>W2110692702
JAIQDJ010000001
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
50884
50960
+
Ile
GAT
[ENA]
¡û
>W2110692705
JAIQDJ010000001
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
134797
134873
+
Ile
GAT
[ENA]
¡û
>C211137776
CP060719
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [CP060719]
836723
836647
-
Ile
GAT
-
¡û
>C211137779
CP060719
Gammaproteobacteria
Thermomonas carbonis KCTC 42013 [CP060719]
494846
494770
-
Ile
GAT
-
¡û
>C211342459
CP076103
Gammaproteobacteria
Lysobacter capsici NF87_2 [CP076103]
486160
486236
+
Ile
GAT
-
¡û
>C211342461
CP076103
Gammaproteobacteria
Lysobacter capsici NF87_2 [CP076103]
1100735
1100811
+
Ile
GAT
-
¡û
>C231331327
CP093311
Gammaproteobacteria
Thermomonas sp. IMCC34681 [CP093311]
2492439
2492363
-
Ile
GAT
-
¡û
>C231331330
CP093311
Gammaproteobacteria
Thermomonas sp. IMCC34681 [CP093311]
2206656
2206580
-
Ile
GAT
-
¡û
>C231343405
CP094357
Gammaproteobacteria
Lysobacter capsici VKM B-2533 [CP094357]
469530
469606
+
Ile
GAT
-
¡û
>C231343407
CP094357
Gammaproteobacteria
Lysobacter capsici VKM B-2533 [CP094357]
1069281
1069357
+
Ile
GAT
-
¡û
>C231564057
CP114978
Gammaproteobacteria
Pseudoxanthomonas sp. [CP114978]
3329967
3330043
+
Ile
GAT
-
¡û
>C231564083
CP114978
Gammaproteobacteria
Pseudoxanthomonas sp. [CP114978]
2788645
2788569
-
Ile
GAT
-
¡û
>C241317247
CP134269
Gammaproteobacteria
Lysobacter capsici XL2 [CP134269]
477460
477536
+
Ile
GAT
-
¡û
>C241317249
CP134269
Gammaproteobacteria
Lysobacter capsici XL2 [CP134269]
1086473
1086549
+
Ile
GAT
-
¡û
>C241317297
CP134270
Gammaproteobacteria
Lysobacter capsici XL1 [CP134270]
477446
477522
+
Ile
GAT
-
¡û
>C241317299
CP134270
Gammaproteobacteria
Lysobacter capsici XL1 [CP134270]
1086488
1086564
+
Ile
GAT
-
¡û
>W1511595040
LBMI01000013
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
2322
2398
+
Ile
GAT
[ENA]
¡û
>C121005581
CP003093
Gammaproteobacteria
Pseudoxanthomonas spadix BD-a59 [CP003093]
3414271
3414195
-
Ile
GAT
[Ensembl]
¡û
>C161031582
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
499937
500013
+
Ile
GAT
[Ensembl]
¡û
>C161031584
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
1100335
1100411
+
Ile
GAT
[Ensembl]
¡û
>W1610728798
LMHM01000007
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
3550
3474
-
Ile
GAT
[ENA]
¡û
>ENV000316
AF268429
Environmental sample from ENV division of INSDC
201
277
+
Ile
GAT
[ENA]
>W1710544595
FOAX01000008
Gammaproteobacteria
Pseudoxanthomonas sp. GM95 [FOAX]
2236
2312
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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