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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175774 (135 seq.)
>W1710923729
LOBU02000015
Actinomycetota
Amycolatopsis regifaucium [LOBU]
546527
546451
-
Asp
GTC
[ENA]
¡û
>W1711004811
LQMT02000022
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
318803
318879
+
Asp
GTC
[ENA]
¡û
>W131064626
ANMG01000059
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
48910
48986
+
Asp
GTC
[ENA]
¡û
>W131091939
AOHO01000048
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
385987
386063
+
Asp
GTC
[ENA]
¡û
>W131100483
AOUO01000378
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
4929
5005
+
Asp
GTC
[ENA]
¡û
>W131158758
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
4515166
4515092
-
Asp
GTC
[ENA]
¡û
>W131164049
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
2009163
2009239
+
Asp
GTC
[ENA]
¡û
>W131164591
ARAX01000004
Actinomycetota
Sciscionella marina DSM 45152 [ARAX]
263030
263104
+
Asp
GTC
[ENA]
¡û
>W131165085
ARBH01000007
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
397701
397777
+
Asp
GTC
[ENA]
¡û
>W131170908
ARFV01000045
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
3044
2968
-
Asp
GTC
[ENA]
¡û
>W131181792
ARPK01000004
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
1974553
1974477
-
Asp
GTC
[ENA]
¡û
>W131191628
ASJB01000085
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
79363
79439
+
Asp
GTC
[ENA]
¡û
>W131202805
ASXG01000127
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
23921
23997
+
Asp
GTC
[ENA]
¡û
>W131202834
ASXH01000023
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
25729
25653
-
Asp
GTC
[ENA]
¡û
>W1711662745
MQUQ01000015
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
485426
485502
+
Asp
GTC
[ENA]
¡û
>W1711749202
MUMI01000024
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
50050
50126
+
Asp
GTC
[ENA]
¡û
>W1711749346
MUMK01000361
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
1665
1741
+
Asp
GTC
[ENA]
¡û
>W1711765415
MUXN01000005
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
69074
68998
-
Asp
GTC
[ENA]
¡û
>W1711790852
MWIH01000005
Actinomycetota
Saccharomonospora piscinae LRS4.154 [MWIH]
1354338
1354262
-
Asp
GTC
[ENA]
¡û
>C171046310
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
8952086
8952010
-
Asp
GTC
-
¡û
>W131219660
ATYT01000001
Actinomycetota
Thermocrispum municipale DSM 44069 [ATYT]
495881
495807
-
Asp
GTC
[ENA]
¡û
>W131219897
ATYX01000014
Actinomycetota
Thermocrispum agreste DSM 44070 [ATYX]
10719
10645
-
Asp
GTC
[ENA]
¡û
>WENV180745581
ODHL01000069
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
4625
4549
-
Asp
GTC
[ENA]
¢þ
>WENV180745583
ODHL01000069
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
4428
4353
-
Asp
GTC
[ENA]
¢þ
>WENV180749685
ODHR01000403
[ODHR] human metagenome; G_DNA_Anterior nares
2316
2241
-
Asp
GTC
[ENA]
¢þ
>WENV180844807
ODKO01009868
[ODKO] human metagenome; G_DNA_Anterior nares
74
149
+
Asp
GTC
[ENA]
¢þ
>WENV180878643
ODLX01002010
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
2203
2278
+
Asp
GTC
[ENA]
¢þ
>WENV180878768
ODLY01000023
[ODLY] human metagenome; G_DNA_Anterior nares
54060
54136
+
Asp
GTC
[ENA]
¢þ
>WENV180913537
ODSU01013315
[ODSU] human metagenome; G_DNA_Anterior nares
252
176
-
Asp
GTC
[ENA]
¢þ
>WENV180918076
ODTF01000068
[ODTF] human metagenome; G_DNA_Anterior nares
25352
25428
+
Asp
GTC
[ENA]
¢þ
>WENV180918078
ODTF01000068
[ODTF] human metagenome; G_DNA_Anterior nares
25549
25624
+
Asp
GTC
[ENA]
¢þ
>WENV180984530
ODVH01000090
[ODVH] human metagenome; G_DNA_Anterior nares
895
970
+
Asp
GTC
[ENA]
¢þ
>WENV181007026
ODWC01005355
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
177
252
+
Asp
GTC
[ENA]
¢þ
>WENV181009994
ODWG01000002
[ODWG] human metagenome; G_DNA_Anterior nares
156673
156748
+
Asp
GTC
[ENA]
¢þ
>WENV181012962
ODWL01001600
[ODWL] human metagenome; G_DNA_Anterior nares
5
80
+
Asp
GTC
[ENA]
¢þ
>WENV181025042
ODWY01000205
[ODWY] human metagenome; G_DNA_Anterior nares
252
176
-
Asp
GTC
[ENA]
¢þ
>WENV181030377
ODXG01011080
[ODXG] human metagenome; G_DNA_Anterior nares
223
148
-
Asp
GTC
[ENA]
¢þ
>WENV181030382
ODXH01000283
[ODXH] human metagenome; G_DNA_Anterior nares
280
205
-
Asp
GTC
[ENA]
¢þ
>WENV181032357
ODXM01001879
[ODXM] human metagenome; G_DNA_R_Retroauricular crease
5
80
+
Asp
GTC
[ENA]
¢þ
>WENV181040382
ODXR01004278
[ODXR] human metagenome; G_DNA_Anterior nares
56
131
+
Asp
GTC
[ENA]
¢þ
>WENV181042310
ODXT01005670
[ODXT] human metagenome; G_DNA_R_Retroauricular crease
429
505
+
Asp
GTC
[ENA]
¢þ
>WENV181119632
OEFI01010719
[OEFI] human metagenome; G_DNA_Anterior nares
252
176
-
Asp
GTC
[ENA]
¢þ
>WENV181123296
OEFP01000005
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
4629
4553
-
Asp
GTC
[ENA]
¢þ
>WENV181123298
OEFP01000005
[OEFP] human metagenome; G_DNA_R_Retroauricular crease
4432
4357
-
Asp
GTC
[ENA]
¢þ
>WENV181124347
OEFR01000092
[OEFR] human metagenome; G_DNA_Anterior nares
775
850
+
Asp
GTC
[ENA]
¢þ
>WENV181131012
OEFZ01000164
[OEFZ] human metagenome; G_DNA_Anterior nares
5363
5438
+
Asp
GTC
[ENA]
¢þ
>WENV181163615
OEIQ01123510
[OEIQ] soil metagenome; soil
97
23
-
Asp
GTC
[ENA]
¢þ
>W141151748
AXBH01000004
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
1130604
1130678
+
Asp
GTC
[ENA]
¡û
>W141170096
AXWW01000101
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
6567
6643
+
Asp
GTC
[ENA]
¡û
>W141199755
AYXG01000076
Actinomycetota
Actinokineospora spheciospongiae EG49 [AYXG]
68898
68972
+
Asp
GTC
[ENA]
¡û
>W141215920
AZUM01000002
Actinomycetota
Saccharomonospora piscinae CNQ490 [AZUM]
939433
939357
-
Asp
GTC
[ENA]
¡û
>WENV182629852
OJKV01000098
[OJKV] metagenome; surface
6176
6251
+
Asp
GTC
[ENA]
¢þ
>WENV182641258
OJLG01000002
[OJLG] metagenome; surface
165705
165780
+
Asp
GTC
[ENA]
¢þ
>WENV182642863
OJLP01008722
[OJLP] metagenome; surface
56
131
+
Asp
GTC
[ENA]
¢þ
>W141284047
JALM01000028
Actinomycetota
Sciscionella sp. SE31 [JALM]
69094
69168
+
Asp
GTC
[ENA]
¡û
>WENV183723972
PEHZ01012044
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
701
626
-
Asp
GTC
[ENA]
¢þ
>WENV183748540
PPFU01050838
[PPFU] hypolithon metagenome; Antarctic Hypolithon
999
923
-
Asp
GTC
[ENA]
¢þ
>W141451906
JFBM01000010
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
36015
36091
+
Asp
GTC
[ENA]
¡û
>C181016765
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
6957246
6957320
+
Asp
GTC
-
¡û
>C181019529
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
6488753
6488679
-
Asp
GTC
-
¡û
>C181028445
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
8154303
8154377
+
Asp
GTC
-
¡û
>C181107764
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
136887
136961
+
Asp
GTC
-
¡û
>C191157692
CP038101
Actinomycetota
Saccharomonospora xinjiangensis 31sw [CP038101]
4421475
4421399
-
Asp
GTC
-
¡û
>W141712006
JMQG01000043
Actinomycetota
Amycolatopsis mediterranei [JMQG]
28907
28983
+
Asp
GTC
[ENA]
¡û
>W141712148
JMQI01000079
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
57486
57410
-
Asp
GTC
[ENA]
¡û
>W141712192
JMQJ01000070
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
28907
28983
+
Asp
GTC
[ENA]
¡û
>W09120707
ACEV01000001
Actinomycetota
Streptomyces sp. AA4 [ACEV]
136890
136966
+
Asp
GTC
[ENA]
¡û
>W141758364
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
445522
445598
+
Asp
GTC
[ENA]
¡û
>W141758967
JNYZ01000012
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
160747
160823
+
Asp
GTC
[ENA]
¡û
>W141773335
JOIJ01000017
Actinomycetota
Prauserella rugosa [JOIJ]
10545
10471
-
Asp
GTC
[ENA]
¡û
>W141773697
JOIQ01000002
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
334030
334106
+
Asp
GTC
[ENA]
¡û
>W141806109
JPLW01000001
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
834836
834760
-
Asp
GTC
[ENA]
¡û
>C141001863
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
375836
375912
+
Asp
GTC
[Ensembl]
¡û
>W1910657614
MASU01000011
Actinomycetota
Prauserella flavalba YIM 121212 [MASU]
14317
14393
+
Asp
GTC
[ENA]
¡û
>W1910657648
MASV01000002
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
315368
315292
-
Asp
GTC
[ENA]
¡û
>W1910994777
NKYE01000001
Actinomycetota
Amycolatopsis antarctica AU-G6 [NKYE]
38780
38706
-
Asp
GTC
[ENA]
¡û
>W1911071555
NMQT01000100
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
23324
23398
+
Asp
GTC
[ENA]
¡û
>W1911071587
NMQU01000026
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
182856
182930
+
Asp
GTC
[ENA]
¡û
>W1911075185
NMUK01000058
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
94419
94345
-
Asp
GTC
[ENA]
¡û
>W1911075211
NMUL01000001
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
124923
124849
-
Asp
GTC
[ENA]
¡û
>W1911676663
QHHU01000047
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
38740
38814
+
Asp
GTC
[ENA]
¡û
>W1911676745
QHHW01000006
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
22339
22265
-
Asp
GTC
[ENA]
¡û
>W1911676809
QHHX01000002
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
309863
309937
+
Asp
GTC
[ENA]
¡û
>W1911678750
QHJJ01000004
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
147074
147000
-
Asp
GTC
[ENA]
¡û
>W1911678776
QHJK01000001
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
586551
586625
+
Asp
GTC
[ENA]
¡û
>W1911678905
QHJM01000006
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
11057
10983
-
Asp
GTC
[ENA]
¡û
>W1911679687
QHKL01000001
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
388635
388561
-
Asp
GTC
[ENA]
¡û
>W1911814721
QZFV01000146
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
12956
13030
+
Asp
GTC
[ENA]
¡û
>W1810058392
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
1800041
1799967
-
Asp
GTC
[ENA]
¡û
>W1810173308
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
2343930
2343856
-
Asp
GTC
[ENA]
¡û
>W1810237696
PPHG01000091
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
41777
41703
-
Asp
GTC
[ENA]
¡û
>W1810254780
PQHW01000066
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
23286
23360
+
Asp
GTC
[ENA]
¡û
>W1810254818
PQHX01000012
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
37344
37270
-
Asp
GTC
[ENA]
¡û
>W1810254869
PQHY01000023
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
16838
16764
-
Asp
GTC
[ENA]
¡û
>W1810254926
PQHZ01000022
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
29658
29732
+
Asp
GTC
[ENA]
¡û
>W1810254955
PQIA01000012
Actinomycetota
Amycolatopsis circi DSM 45561 [PQIA]
97956
98030
+
Asp
GTC
[ENA]
¡û
>W1810608714
QGTN01000002
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
51468
51394
-
Asp
GTC
[ENA]
¡û
>W1810623446
QHCP01000003
Actinomycetota
Actinokineospora spheciospongiae CECT 8578 [QHCP]
53697
53771
+
Asp
GTC
[ENA]
¡û
>W1810885750
QUNO01000001
Actinomycetota
Kutzneria buriramensis DSM 45791 [QUNO]
319573
319647
+
Asp
GTC
[ENA]
¡û
>C151018965
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
2820524
2820600
+
Asp
GTC
-
¡û
>C151040859
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
8022473
8022397
-
Asp
GTC
[Ensembl]
¡û
>C151044226
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
6858701
6858627
-
Asp
GTC
[Ensembl]
¡û
>C10100499
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
367406
367482
+
Asp
GTC
[Ensembl]
¡û
>C10112957
CP001683
Actinomycetota
Saccharomonospora viridis DSM 43017 [CP001683]
4035120
4035044
-
Asp
GTC
[Ensembl]
¡û
>C11100890
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
367409
367485
+
Asp
GTC
-
¡û
>W1511360261
JRZE01000003
Actinomycetota
Saccharomonospora viridis JCM 3315 [JRZE]
454882
454806
-
Asp
GTC
[ENA]
¡û
>W1511402129
JTJI01000010
Actinomycetota
Prauserella sp. Am3 [JTJI]
11874
11800
-
Asp
GTC
[ENA]
¡û
>W1511509625
JXRD01000024
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
82718
82642
-
Asp
GTC
[ENA]
¡û
>W1511687593
LFVR01000033
Actinomycetota
Streptomyces regensis NRRL B-11479 [LFVR]
29900
29974
+
Asp
GTC
[ENA]
¡û
>W11176365
AFWY01000011
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
684654
684728
+
Asp
GTC
[ENA]
¡û
>W11181200
AGIU01000020
Actinomycetota
Saccharomonospora azurea NA-128 [AGIU]
45862
45938
+
Asp
GTC
[ENA]
¡û
>C121015451
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
375838
375914
+
Asp
GTC
-
¡û
>W121010606
AGJI02000010
Actinomycetota
Saccharomonospora glauca K62 [AGJI]
27043
26967
-
Asp
GTC
[ENA]
¡û
>W121036271
AHLX01000006
Actinomycetota
Saccharomonospora marina XMU15 [AHLX]
1609555
1609479
-
Asp
GTC
[ENA]
¡û
>W121036322
AHLY01000004
Actinomycetota
Saccharomonospora cyanea NA-134 [AHLY]
61135
61059
-
Asp
GTC
[ENA]
¡û
>W121045473
AICV01000012
Actinomycetota
Saccharomonospora xinjiangensis XJ-54 [AICV]
2456950
2457026
+
Asp
GTC
[ENA]
¡û
>C131003609
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
422472
422548
+
Asp
GTC
[Ensembl]
¡û
>W1610781184
LOBU01000001
Actinomycetota
Amycolatopsis regifaucium [LOBU]
305108
305032
-
Asp
GTC
[ENA]
¡û
>W1610855416
LQMT01000044
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
14260
14336
+
Asp
GTC
[ENA]
¡û
>W1710512158
FMZE01000006
Actinomycetota
Prauserella marina [FMZE]
53232
53158
-
Asp
GTC
[ENA]
¡û
>W1710513221
FMZZ01000005
Actinomycetota
Actinokineospora iranica iranicum [FMZZ]
317243
317319
+
Asp
GTC
[ENA]
¡û
>W1710530126
FNON01000002
Actinomycetota
Amycolatopsis xylanica [FNON]
566207
566283
+
Asp
GTC
[ENA]
¡û
>W1710535464
FNSO01000003
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
991768
991844
+
Asp
GTC
[ENA]
¡û
>W1710536184
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
3590542
3590466
-
Asp
GTC
[ENA]
¡û
>W1710538211
FNUJ01000005
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
425186
425262
+
Asp
GTC
[ENA]
¡û
>W1710549012
FOEF01000008
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
28163
28239
+
Asp
GTC
[ENA]
¡û
>W1710551764
FOGI01000009
Actinomycetota
Actinokineospora terrae [FOGI]
98665
98589
-
Asp
GTC
[ENA]
¡û
>W1710556486
FOKG01000001
Actinomycetota
Amycolatopsis marina [FOKG]
122550
122476
-
Asp
GTC
[ENA]
¡û
>W1710563372
FOPQ01000001
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
268860
268936
+
Asp
GTC
[ENA]
¡û
>W1710565897
FORP01000008
Actinomycetota
Amycolatopsis sacchari [FORP]
155913
155989
+
Asp
GTC
[ENA]
¡û
>W1710571658
FOWC01000001
Actinomycetota
Amycolatopsis rubida [FOWC]
359950
359874
-
Asp
GTC
[ENA]
¡û
>W1710572501
FOWS01000004
Actinomycetota
Saccharomonospora viridis [FOWS]
455632
455556
-
Asp
GTC
[ENA]
¡û
>W1710572705
FOWW01000003
Actinomycetota
Amycolatopsis arida deserti [FOWW]
179963
179887
-
Asp
GTC
[ENA]
¡û
>W1710628114
JPRA01000097
Actinomycetota
Amycolatopsis mediterranei [JPRA]
5207
5131
-
Asp
GTC
[ENA]
¡û
>W1710773675
LIWC01000002
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
1829016
1829092
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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