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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176784 (42 seq.)
>W1711229704
LXYR01000025
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
3012
2938
-
Pro
CGG
[ENA]
¡û
>W1711584862
MNYZ01000070
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
2256
2331
+
Pro
CGG
[ENA]
¡û
>W1711629800
MPPI01000049
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
16346
16419
+
Pro
CGG
[ENA]
¡û
>C171000060
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
1950832
1950759
-
Pro
CGG
-
¡û
>C171000123
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
1950832
1950759
-
Pro
CGG
-
¡û
>W131036295
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
4170284
4170357
+
Pro
CGG
[ENA]
¡û
>W141038208
ALVK01000015
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
1442096
1442169
+
Pro
CGG
[ENA]
¡û
>W141067388
ASAK01000002
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
124361
124286
-
Pro
CGG
[ENA]
¡û
>W141096699
AVFS01000026
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
107880
107955
+
Pro
CGG
[ENA]
¡û
>W141096761
AVFT01000131
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
3936
4011
+
Pro
CGG
[ENA]
¡û
>W141096782
AVFU01000063
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
18118
18043
-
Pro
CGG
[ENA]
¡û
>W141096821
AVFV01000112
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
4853
4778
-
Pro
CGG
[ENA]
¡û
>W141096869
AVFW01000149
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
81781
81856
+
Pro
CGG
[ENA]
¡û
>W141096890
AVFX01000040
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
28444
28369
-
Pro
CGG
[ENA]
¡û
>W141096933
AVFY01000061
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
19731
19656
-
Pro
CGG
[ENA]
¡û
>W141096960
AVFZ01000102
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
22554
22629
+
Pro
CGG
[ENA]
¡û
>W141231465
BAUB01000002
Cyanobacteriota
Picosynechococcus sp. NKBG15041c NKBG15041c [BAUB]
338859
338784
-
Pro
CGG
[ENA]
¡û
>W141234735
BAWS01000001
Cyanobacteriota
Picosynechococcus sp. NKBG042902 NKBG 042902 [BAWS]
261118
261043
-
Pro
CGG
[ENA]
¡û
>C08010877
CP000951
Cyanobacteriota
Picosynechococcus sp. PCC 7002 PCC 7002; ATCC 27264 [CP000951]
811442
811367
-
Pro
CGG
[Ensembl]
¡û
>WENV170002207
AGSF01000729
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
1967
1892
-
Pro
CGG
[ENA]
¢þ
>WENV170002291
AGSF01005258
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
730
805
+
Pro
CGG
[ENA]
¢þ
>C181003883
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
888405
888330
-
Pro
CGG
-
¡û
>C181003884
AP017959
Cyanobacteriota
[Synechococcus] sp. NIES-970 [AP017959]
868349
868274
-
Pro
CGG
-
¡û
>C181004829
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
4982113
4982186
+
Pro
CGG
-
¡û
>C191000814
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
3001254
3001179
-
Pro
CGG
-
¡û
>W1910175488
BJCD01000082
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
9787
9712
-
Pro
CGG
[ENA]
¡û
>W1910194174
CZCS01000239
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
119000
118925
-
Pro
CGG
[ENA]
¡û
>W1910194210
CZCT02000119
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
58921
58846
-
Pro
CGG
[ENA]
¡û
>W1910194283
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
349394
349469
+
Pro
CGG
[ENA]
¡û
>W1910976682
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
3145129
3145202
+
Pro
CGG
[ENA]
¡û
>W1810047885
PCGE01000005
Cyanobacteriota
Synechococcus sp. BDU 130192 [PCGE]
170430
170505
+
Pro
CGG
[ENA]
¡û
>W1810366272
PVWG01000052
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
16091
16164
+
Pro
CGG
[ENA]
¡û
>C161002698
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
2222632
2222559
-
Pro
CGG
[Ensembl]
¡û
>C161064009
CP013998
Cyanobacteriota
Picosynechococcus sp. PCC 73109 [CP013998]
843999
843924
-
Pro
CGG
-
¡û
>C161097332
CP016474
Cyanobacteriota
Picosynechococcus sp. PCC 7003 [CP016474]
830777
830702
-
Pro
CGG
[Ensembl]
¡û
>C161097374
CP016477
Cyanobacteriota
Picosynechococcus sp. PCC 7117 [CP016477]
828909
828834
-
Pro
CGG
[Ensembl]
¡û
>C161097415
CP016483
Cyanobacteriota
Picosynechococcus sp. PCC 8807 [CP016483]
832829
832754
-
Pro
CGG
-
¡û
>W1610057095
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2269956
2270029
+
Pro
CGG
[ENA]
¡û
>W1611013574
LXYR01000025
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
3012
2938
-
Pro
CGG
[ENA]
¡û
>W1710053794
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2269956
2270029
+
Pro
CGG
[ENA]
¡û
>W1710608973
FXBO01000001
Cyanobacteriota
Picosynechococcus sp. OG1 OG1 [FXBO]
965134
965209
+
Pro
CGG
[ENA]
¡û
>W1710609606
FXWN01000001
Cyanobacteriota
Synechococcus sp. 7002 [FXWN]
218508
218583
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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