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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176784 (15 seq.)
>WENV180741662
ODHH01000305
[ODHH] human metagenome; G_DNA_Stool
16810
16733
-
Glu
TTC
[ENA]
¡û
>WENV181662372
OGOG01047476
[OGOG] human gut metagenome; faeces
476
553
+
Glu
TTC
[ENA]
¡û
>WENV181666072
OGOJ01015161
[OGOJ] human gut metagenome; faeces
1258
1181
-
Glu
TTC
[ENA]
¡û
>WENV181692383
OGPA01000060
[OGPA] human gut metagenome; faeces
56726
56803
+
Glu
TTC
[ENA]
¡û
>WENV181702033
OGPH01013502
[OGPH] human gut metagenome; faeces
964
887
-
Glu
TTC
[ENA]
¡û
>WENV181722081
OGPV01021350
[OGPV] human gut metagenome; faeces
633
556
-
Glu
TTC
[ENA]
¡û
>WENV181726414
OGPZ01000815
[OGPZ] human gut metagenome; faeces
17195
17118
-
Glu
TTC
[ENA]
¡û
>WENV181730976
OGQC01045003
[OGQC] human gut metagenome; faeces
525
448
-
Glu
TTC
[ENA]
¡û
>WENV181762171
OGQW01045737
[OGQW] human gut metagenome; faeces
535
458
-
Glu
TTC
[ENA]
¡û
>WENV181796451
OGRT01023758
[OGRT] human gut metagenome; faeces
486
409
-
Glu
TTC
[ENA]
¡û
>WENV182109984
OHIN01019014
[OHIN] human gut metagenome; feces
203
126
-
Glu
TTC
[ENA]
¡û
>WENV182253635
OHTA01010577
[OHTA] human gut metagenome; feces
1422
1499
+
Glu
TTC
[ENA]
¡û
>WENV182603207
OJJL01001078
[OJJL] metagenome; faeces
1153
1076
-
Glu
TTC
[ENA]
¡û
>WENV182903138
OKSX01002091
[OKSX] human gut metagenome; feces
1187
1110
-
Glu
TTC
[ENA]
¡û
>WENV183124824
OLNW01053130
[OLNW] human gut metagenome; faeces
487
564
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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