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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.179274 (21 seq.)
>W131111724
APMN01000002
Alphaproteobacteria
Rickettsia prowazekii str. GvF12 [APMN]
109353
109429
+
Met
CAT
[ENA]
¡û
>W131111758
APMO01000001
Alphaproteobacteria
Rickettsia prowazekii str. Cairo 3 [APMO]
29194
29118
-
Met
CAT
[ENA]
¡û
>C019075
AJ235269
Alphaproteobacteria
Rickettsia prowazekii [AJ235269]
293839
293915
+
Met
CAT
[Ensembl]
¡û
>C019354
AE017197
Alphaproteobacteria
Rickettsia typhi str. Wilmington [AE017197]
291448
291524
+
Met
CAT
[Ensembl]
¡û
>WENV170576748
FRDC01001675
[FRDC] freshwater metagenome; water
84885
84809
-
Met
CAT
[ENA]
¡û
>WENV170713495
LNFM01033034
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
143
67
-
Met
CAT
[ENA]
¡û
>WENV170918617
MDTF01002093
[MDTF] marine metagenome; seawater
4335
4411
+
Met
CAT
[ENA]
¡û
>C191225747
LS992663
Alphaproteobacteria
Rickettsia typhi [LS992663]
291600
291676
+
Met
CAT
-
¡û
>C11118786
CP001584
Alphaproteobacteria
Rickettsia prowazekii str. Rp22 [CP001584]
293817
293893
+
Met
CAT
[Ensembl]
¡û
>C121012154
CP003391
Alphaproteobacteria
Rickettsia prowazekii str. Chernikova [CP003391]
292033
292109
+
Met
CAT
[Ensembl]
¡û
>C121012187
CP003392
Alphaproteobacteria
Rickettsia prowazekii str. Katsinyian [CP003392]
293840
293916
+
Met
CAT
[Ensembl]
¡û
>C121012220
CP003393
Alphaproteobacteria
Rickettsia prowazekii str. BuV67-CWPP [CP003393]
293848
293924
+
Met
CAT
[Ensembl]
¡û
>C121012253
CP003394
Alphaproteobacteria
Rickettsia prowazekii str. Dachau [CP003394]
292037
292113
+
Met
CAT
[Ensembl]
¡û
>C121012290
CP003395
Alphaproteobacteria
Rickettsia prowazekii str. GvV257 [CP003395]
636008
636084
+
Met
CAT
[Ensembl]
¡û
>C121012319
CP003396
Alphaproteobacteria
Rickettsia prowazekii str. RpGvF24 [CP003396]
294067
294143
+
Met
CAT
[Ensembl]
¡û
>C121012350
CP003397
Alphaproteobacteria
Rickettsia typhi str. TH1527 [CP003397]
291462
291538
+
Met
CAT
[Ensembl]
¡û
>C121012383
CP003398
Alphaproteobacteria
Rickettsia typhi str. B9991CWPP [CP003398]
291879
291955
+
Met
CAT
[Ensembl]
¡û
>C161078725
CP014865
Alphaproteobacteria
Rickettsia prowazekii Naples-1 [CP014865]
293816
293892
+
Met
CAT
-
¡û
>C131014586
CP004888
Alphaproteobacteria
Rickettsia prowazekii str. NMRC Madrid E [CP004888]
1001720
1001644
-
Met
CAT
[Ensembl]
¡û
>C131014627
CP004889
Alphaproteobacteria
Rickettsia prowazekii str. Breinl [CP004889]
475357
475281
-
Met
CAT
[Ensembl]
¡û
>W1610912212
LSIB01000136
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
296775
296851
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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