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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18379 (37 seq.)
>WENV170012519
ASRL01000059
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
25117
25207
+
Ser
GCT
[ENA]
¡û
>WENV170012582
ASRM01000044
[ASRM] bioreactor metagenome; day 74 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
169
79
-
Ser
GCT
[ENA]
¡û
>WENV170012658
ASRN01000056
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
229
139
-
Ser
GCT
[ENA]
¡û
>WENV170012763
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
351
261
-
Ser
GCT
[ENA]
¡û
>WENV170012825
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9793
9883
+
Ser
GCT
[ENA]
¡û
>WENV170012947
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20543
20633
+
Ser
GCT
[ENA]
¡û
>WENV170013050
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
341
251
-
Ser
GCT
[ENA]
¡û
>WENV170014442
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20543
20633
+
Ser
GCT
[ENA]
¡û
>WENV170646379
JQGR01000547
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
3352
3442
+
Ser
GCT
[ENA]
¡û
>C181196991
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
1977744
1977654
-
Ser
GCT
-
¡û
>C181197056
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2057235
2057145
-
Ser
GCT
-
¡û
>C191084468
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
180185
180275
+
Ser
GCT
-
¡û
>C191084632
CP032101
Campylobacterota
Malaciobacter marinus JCM 15502 [CP032101]
197688
197778
+
Ser
GCT
-
¡û
>W141814480
JQGL01000031
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
4801
4891
+
Ser
GCT
[ENA]
¡û
>W1911413083
NWVW01000023
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
3710
3620
-
Ser
GCT
[ENA]
¡û
>W1911413130
NWVX01000035
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
25290
25380
+
Ser
GCT
[ENA]
¡û
>W1911419370
NXAO01000017
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
3643
3553
-
Ser
GCT
[ENA]
¡û
>W1911426208
NXID01000069
Campylobacterota
Arcobacter mytili LMG 24559 CECT 7386 [NXID]
3638
3548
-
Ser
GCT
[ENA]
¡û
>W1911426294
NXIF01000048
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
3675
3585
-
Ser
GCT
[ENA]
¡û
>W1911576253
PDJW01000060
Campylobacterota
Arcobacter mytili T234 [PDJW]
3658
3568
-
Ser
GCT
[ENA]
¡û
>W1911576316
PDJX01000025
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
19009
19099
+
Ser
GCT
[ENA]
¡û
>W1911576368
PDJY01000037
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
25247
25337
+
Ser
GCT
[ENA]
¡û
>W1911576511
PDKC01000045
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
11697
11787
+
Ser
GCT
[ENA]
¡û
>W1911576682
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
18995
19085
+
Ser
GCT
[ENA]
¡û
>W1810295925
PTIW01000037
Campylobacterota
Malaciobacter marinus MARC-MIP3H16 [PTIW]
3801
3711
-
Ser
GCT
[ENA]
¡û
>W2011138876
NWVW01000023
Campylobacterota
Arcobacter sp. F138-33 [NWVW]
3710
3620
-
Ser
GCT
[ENA]
¡û
>W2011138923
NWVX01000035
Campylobacterota
Arcobacter marinus F140-37 [NWVX]
25290
25380
+
Ser
GCT
[ENA]
¡û
>W2011139268
NXAO01000017
Campylobacterota
Arcobacter marinus CECT 7727 [NXAO]
3643
3553
-
Ser
GCT
[ENA]
¡û
>W2011145066
NXID01000069
Campylobacterota
Arcobacter mytili LMG 24559 CECT 7386 [NXID]
3638
3548
-
Ser
GCT
[ENA]
¡û
>W2011145152
NXIF01000048
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
3675
3585
-
Ser
GCT
[ENA]
¡û
>W2011186067
PDJW01000060
Campylobacterota
Arcobacter mytili T234 [PDJW]
3658
3568
-
Ser
GCT
[ENA]
¡û
>W2011186130
PDJX01000025
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
19009
19099
+
Ser
GCT
[ENA]
¡û
>W2011186182
PDJY01000037
Campylobacterota
Arcobacter halophilus F166-45 [PDJY]
25247
25337
+
Ser
GCT
[ENA]
¡û
>W2011186325
PDKC01000045
Campylobacterota
Arcobacter sp. CECT 8985 [PDKC]
11697
11787
+
Ser
GCT
[ENA]
¡û
>W2011186496
PDKG01000016
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
18995
19085
+
Ser
GCT
[ENA]
¡û
>C241068590
CP042812
Campylobacterota
Malaciobacter canalis LMG 29148 [CP042812]
222416
222506
+
Ser
GCT
-
¡û
>W1710602851
FUYO01000040
Campylobacterota
Malaciobacter marinus [FUYO]
18892
18982
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK