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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.188354 (110 seq.)
>W1711088364
LSYU01000094
Gammaproteobacteria
Marichromatium gracile [LSYU]
2961
2885
-
Ile
GAT
[ENA]
¡û
>C171101062
CP019936
Gammaproteobacteria
Chromatiaceae bacterium 2141T.STBD.0c.01a [CP019936]
604655
604731
+
Ile
GAT
-
¡û
>W131164860
ARBC01000182
Gammaproteobacteria
Lamprocystis purpurea DSM 4197 [ARBC]
411
335
-
Ile
GAT
[ENA]
¡û
>WENV180043332
LQAH01030195
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
416
492
+
Ile
GAT
[ENA]
¡û
>WENV180091059
MPMF02172714
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
30
104
+
Ile
GAT
[ENA]
¡û
>WENV180241684
OBDI01000165
[OBDI] metagenome; diffuse fluid
2905
2829
-
Ile
GAT
[ENA]
¡û
>WENV180294209
OBIY01037073
[OBIY] beach sand metagenome; beach sand
3
79
+
Ile
GAT
[ENA]
¡û
>WENV180297517
OBJA01038543
[OBJA] soil metagenome; sediment, water from around vicinity
312
388
+
Ile
GAT
[ENA]
¡û
>WENV180311665
OBJT01452593
[OBJT] soil metagenome; soil
121
45
-
Ile
GAT
[ENA]
¡û
>WENV180346049
OBLN01022549
[OBLN] sediment metagenome; sediment
6
82
+
Ile
GAT
[ENA]
¡û
>WENV180396261
OBPU01091235
[OBPU] marine metagenome; ENVO:00002010
317
243
-
Ile
GAT
[ENA]
¡û
>W141055242
AONC01000053
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
1824
1900
+
Ile
GAT
[ENA]
¡û
>WENV180583096
OCNB01000211
[OCNB] metagenome; diffuse fluid
2604
2528
-
Ile
GAT
[ENA]
¡û
>WENV181170026
OEIV010020166
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1654
1578
-
Ile
GAT
[ENA]
¡û
>WENV181367848
OFQD01001933
[OFQD] freshwater metagenome; Freshwater Lake
135
211
+
Ile
GAT
[ENA]
¡û
>WENV181413602
OGCK01095663
[OGCK] hot springs metagenome; hot spring sediment
254
178
-
Ile
GAT
[ENA]
¡û
>WENV183721265
PDWJ01061593
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1617
1541
-
Ile
GAT
[ENA]
¡û
>WENV170014058
AVFP01004244
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
1800
1876
+
Ile
GAT
[ENA]
¡û
>WENV170623763
FUWD013170612
[FUWD] metagenome; unknown
535
611
+
Ile
GAT
[ENA]
¡û
>WENV170632038
FUWD013377684
[FUWD] metagenome; unknown
535
611
+
Ile
GAT
[ENA]
¡û
>WENV170680501
LFCJ01013071
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
2727
2803
+
Ile
GAT
[ENA]
¡û
>WENV170696215
LGVF01003674
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
727
651
-
Ile
GAT
[ENA]
¡û
>WENV170980500
MWSB01001225
[MWSB] mollusc metagenome; gill 31 cm from animal A
3503
3427
-
Ile
GAT
[ENA]
¡û
>WENV170980586
MWSC01002916
[MWSC] mollusc metagenome; gill 70 cm from animal B
5139
5063
-
Ile
GAT
[ENA]
¡û
>WENV170980609
MWSD01000029
[MWSD] mollusc metagenome; gill 40 cm from animal B
33337
33413
+
Ile
GAT
[ENA]
¡û
>WENV170980686
MWSE01000034
[MWSE] mollusc metagenome; gill 28 cm from animal B
29147
29071
-
Ile
GAT
[ENA]
¡û
>C181044107
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
895110
895186
+
Ile
GAT
-
¡û
>C181044117
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
1946403
1946479
+
Ile
GAT
-
¡û
>W141822440
JQSG01000009
Gammaproteobacteria
Acidihalobacter prosperus [JQSG]
6690
6614
-
Ile
GAT
[ENA]
¡û
>W1910208716
FLUY01001030
Gammaproteobacteria
Candidatus Thiosymbion oneisti [FLUY]
8705
8781
+
Ile
GAT
[ENA]
¡û
>W1910208740
FLUZ01000151
Gammaproteobacteria
Candidatus Thiosymbion oneisti [FLUZ]
28072
28148
+
Ile
GAT
[ENA]
¡û
>W1810236288
PPGH01000010
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
13946
13870
-
Ile
GAT
[ENA]
¡û
>W1810236315
PPGH01000035
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
146559
146483
-
Ile
GAT
[ENA]
¡û
>W1810236323
PPGH01000037
Gammaproteobacteria
Chromatium okenii LaCa [PPGH]
757407
757483
+
Ile
GAT
[ENA]
¡û
>C151016239
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
296202
296278
+
Ile
GAT
[Ensembl]
¡û
>C151016255
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
1453265
1453341
+
Ile
GAT
[Ensembl]
¡û
>C151016267
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
3425821
3425745
-
Ile
GAT
[Ensembl]
¡û
>W2010377222
FLUY01001030
Gammaproteobacteria
Candidatus Thiosymbion oneisti [FLUY]
8705
8781
+
Ile
GAT
[ENA]
¡û
>W2010377246
FLUZ01000151
Gammaproteobacteria
Candidatus Thiosymbion oneisti [FLUZ]
28072
28148
+
Ile
GAT
[ENA]
¡û
>W2010453887
JAAEFD010000075
Gammaproteobacteria
Candidatus Thiosymbion oneisti [JAAEFD]
19191
19115
-
Ile
GAT
[ENA]
¡û
>W2010473256
JAAIJR010000215
Gammaproteobacteria
Thiorhodococcus mannitoliphagus DSM 18266 [JAAIJR]
3519
3443
-
Ile
GAT
[ENA]
¡û
>W2010578634
JAAXKX010000040
Gammaproteobacteria
Marichromatium bheemlicum DSM 18632 [JAAXKX]
1789
1865
+
Ile
GAT
[ENA]
¡û
>W2010652827
JABZEO010000041
Gammaproteobacteria
Allochromatium humboldtianum DSM 21881 [JABZEO]
1825
1901
+
Ile
GAT
[ENA]
¡û
>W2010676485
JACCKB010000132
Gammaproteobacteria
Endozoicomonas sp. SM1973 [JACCKB]
2239
2163
-
Ile
GAT
[ENA]
¡û
>W2011389255
RBXL01000001
Gammaproteobacteria
Thiocapsa rosea DSM 235 [RBXL]
541513
541589
+
Ile
GAT
[ENA]
¡û
>W2011389261
RBXL01000001
Gammaproteobacteria
Thiocapsa rosea DSM 235 [RBXL]
2211356
2211432
+
Ile
GAT
[ENA]
¡û
>W2011417392
RHFI01000046
Gammaproteobacteria
Marichromatium sp. AB31 [RHFI]
3469
3393
-
Ile
GAT
[ENA]
¡û
>W2011443230
RJVI01000003
Gammaproteobacteria
Inmirania thermothiophila DSM 100275 [RJVI]
248175
248251
+
Ile
GAT
[ENA]
¡û
>W2011631906
SMDC01000023
Gammaproteobacteria
Marichromatium gracile DSM 203 [SMDC]
3136
3060
-
Ile
GAT
[ENA]
¡û
>W2011639664
SMSC01000008
Gammaproteobacteria
Candidatus Thiosymbion oneisti [SMSC]
38742
38818
+
Ile
GAT
[ENA]
¡û
>W2012204913
VWXX01000012
Gammaproteobacteria
Thiohalocapsa marina DSM 19078 [VWXX]
85226
85302
+
Ile
GAT
[ENA]
¡û
>W2012204915
VWXX01000012
Gammaproteobacteria
Thiohalocapsa marina DSM 19078 [VWXX]
90620
90696
+
Ile
GAT
[ENA]
¡û
>W2012398832
WNKT01000087
Gammaproteobacteria
Allochromatium palmeri DSM 15591 [WNKT]
1843
1919
+
Ile
GAT
[ENA]
¡û
>W2110021535
BMEO01000030
Gammaproteobacteria
Marinicella pacifica CGMCC 1.12181 [BMEO]
2579
2503
-
Ile
GAT
[ENA]
¡û
>W2110021537
BMEO01000031
Gammaproteobacteria
Marinicella pacifica CGMCC 1.12181 [BMEO]
2321
2245
-
Ile
GAT
[ENA]
¡û
>W2110603422
JAHHPL010000221
Gammaproteobacteria
Thiocapsa sp. LSW [JAHHPL]
1806
1882
+
Ile
GAT
[ENA]
¡û
>W2110691281
JAIOUV010000013
Gammaproteobacteria
Marinicella sp. NBU2979 [JAIOUV]
2441
2517
+
Ile
GAT
[ENA]
¡û
>C201219844
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
121591
121667
+
Ile
GAT
-
¡û
>C201219849
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
546010
546086
+
Ile
GAT
-
¡û
>C201219854
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
1523879
1523955
+
Ile
GAT
-
¡û
>C201219873
CP048878
Gammaproteobacteria
Oceanospirillales bacterium S2-4-1H [CP048878]
5672664
5672588
-
Ile
GAT
-
¡û
>C211021954
AP024563
Gammaproteobacteria
Allochromatium tepidum NZ [AP024563]
291116
291192
+
Ile
GAT
-
¡û
>C211021981
AP024563
Gammaproteobacteria
Allochromatium tepidum NZ [AP024563]
2717884
2717808
-
Ile
GAT
-
¡û
>C211021986
AP024563
Gammaproteobacteria
Allochromatium tepidum NZ [AP024563]
2125839
2125763
-
Ile
GAT
-
¡û
>C211324787
CP073760
Gammaproteobacteria
Thiocapsa sp. [CP073760]
2669044
2669120
+
Ile
GAT
-
¡û
>C211324793
CP073760
Gammaproteobacteria
Thiocapsa sp. [CP073760]
4400754
4400830
+
Ile
GAT
-
¡û
>W2110751947
NHSF01000059
Gammaproteobacteria
Halochromatium salexigens DSM 4395 [NHSF]
419905
419829
-
Ile
GAT
[ENA]
¡û
>W2110751949
NHSF01000059
Gammaproteobacteria
Halochromatium salexigens DSM 4395 [NHSF]
414556
414480
-
Ile
GAT
[ENA]
¡û
>W2110753207
NRRF01000132
Gammaproteobacteria
Thiocystis violacea DSM 208 [NRRF]
3512
3436
-
Ile
GAT
[ENA]
¡û
>W2110753253
NRRG01000082
Gammaproteobacteria
Thiocystis violacea DSM 207 [NRRG]
1970
2046
+
Ile
GAT
[ENA]
¡û
>W2110753578
NRRQ01000013
Gammaproteobacteria
Chromatium okenii DSM 169 [NRRQ]
46309
46233
-
Ile
GAT
[ENA]
¡û
>W2110753639
NRRR01000020
Gammaproteobacteria
Chromatium weissei DSM 5161 [NRRR]
1571
1647
+
Ile
GAT
[ENA]
¡û
>W2110753643
NRRS01000002
Gammaproteobacteria
Rhabdochromatium marinum DSM 5261 [NRRS]
108619
108543
-
Ile
GAT
[ENA]
¡û
>W2110753645
NRRS01000002
Gammaproteobacteria
Rhabdochromatium marinum DSM 5261 [NRRS]
103236
103160
-
Ile
GAT
[ENA]
¡û
>W2110753784
NRRV01000031
Gammaproteobacteria
Thiohalocapsa halophila DSM 6210 [NRRV]
44550
44474
-
Ile
GAT
[ENA]
¡û
>W2110753786
NRRV01000031
Gammaproteobacteria
Thiohalocapsa halophila DSM 6210 [NRRV]
39060
38984
-
Ile
GAT
[ENA]
¡û
>W2110753844
NRRW01000090
Gammaproteobacteria
Thiococcus pfennigii Pfennig 8320 [NRRW]
1710
1786
+
Ile
GAT
[ENA]
¡û
>W2110753920
NRRY01000039
Gammaproteobacteria
Lamprobacter modestohalophilus DSM 25653 [NRRY]
28041
28117
+
Ile
GAT
[ENA]
¡û
>W2110754011
NRSA01000131
Gammaproteobacteria
Thiococcus pfennigii DSM 228 [NRSA]
5313
5237
-
Ile
GAT
[ENA]
¡û
>W2110754144
NRSD01000006
Gammaproteobacteria
Thiocapsa imhoffii DSM 21303 [NRSD]
196526
196602
+
Ile
GAT
[ENA]
¡û
>W2110754336
NRSJ01000001
Gammaproteobacteria
Halochromatium glycolicum DSM 11080 [NRSJ]
157726
157802
+
Ile
GAT
[ENA]
¡û
>W2110754468
NRSL01000058
Gammaproteobacteria
Allochromatium vinosum MT 86 [NRSL]
3609
3533
-
Ile
GAT
[ENA]
¡û
>C241048081
CP039268
Gammaproteobacteria
Thermochromatium tepidum ATCC 43061 [CP039268]
2848
2924
+
Ile
GAT
-
¡û
>C241048088
CP039268
Gammaproteobacteria
Thermochromatium tepidum ATCC 43061 [CP039268]
355471
355547
+
Ile
GAT
-
¡û
>C241048106
CP039268
Gammaproteobacteria
Thermochromatium tepidum ATCC 43061 [CP039268]
2272984
2272908
-
Ile
GAT
-
¡û
>C241127375
CP048029
Gammaproteobacteria
Caldichromatium japonicum No.7 [CP048029]
1009601
1009677
+
Ile
GAT
-
¡û
>C241127394
CP048029
Gammaproteobacteria
Caldichromatium japonicum No.7 [CP048029]
2636761
2636685
-
Ile
GAT
-
¡û
>C241127403
CP048029
Gammaproteobacteria
Caldichromatium japonicum No.7 [CP048029]
1931118
1931042
-
Ile
GAT
-
¡û
>C241243418
CP121471
Gammaproteobacteria
Thiorhodovibrio frisius 970 [CP121471]
1473314
1473390
+
Ile
GAT
-
¡û
>C241243420
CP121471
Gammaproteobacteria
Thiorhodovibrio frisius 970 [CP121471]
1478973
1479049
+
Ile
GAT
-
¡û
>C10101192
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
114051
114127
+
Ile
GAT
[Ensembl]
¡û
>C10101216
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2906110
2906034
-
Ile
GAT
[Ensembl]
¡û
>C10101231
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2025450
2025374
-
Ile
GAT
[Ensembl]
¡û
>W11176039
AFWT01000001
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
66606
66530
-
Ile
GAT
[ENA]
¡û
>W11176121
AFWU01000015
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
2038
2114
+
Ile
GAT
[ENA]
¡û
>W11176147
AFWV01000002
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
72100
72176
+
Ile
GAT
[ENA]
¡û
>W11178635
AGFC01000063
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
16592
16668
+
Ile
GAT
[ENA]
¡û
>C121006995
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
4381548
4381624
+
Ile
GAT
[Ensembl]
¡û
>C121007014
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
2905444
2905368
-
Ile
GAT
[Ensembl]
¡û
>C121007017
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
2088392
2088316
-
Ile
GAT
[Ensembl]
¡û
>W1610085802
CVPF01000262
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
3534
3458
-
Ile
GAT
[ENA]
¡û
>C131001749
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
1116278
1116354
+
Ile
GAT
[Ensembl]
¡û
>C131001763
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
3621400
3621324
-
Ile
GAT
[Ensembl]
¡û
>W1610516287
JABX01000097
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
3497
3421
-
Ile
GAT
[ENA]
¡û
>W1610922903
LSYU01000094
Gammaproteobacteria
Marichromatium gracile [LSYU]
2961
2885
-
Ile
GAT
[ENA]
¡û
>ENV002900
AY934359
Environmental sample from ENV division of INSDC
76
152
+
Ile
GAT
[ENA]
>W1710090391
CVPF01000262
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
3534
3458
-
Ile
GAT
[ENA]
¡û
>W1710529485
FNNZ01000060
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
1967
2043
+
Ile
GAT
[ENA]
¡û
>W1710530618
FNOW01000069
Gammaproteobacteria
Allochromatium warmingii [FNOW]
3568
3492
-
Ile
GAT
[ENA]
¡û
>W1710611629
JABX01000097
Gammaproteobacteria
Thiohalocapsa sp. ML1 [JABX]
3497
3421
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK