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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190137 (46 seq.)
>W1710821482
LKTL01000010
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
34944
35020
+
Met
CAT
[ENA]
¡û
>W1711273464
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
128824
128748
-
Met
CAT
[ENA]
¡û
>W1711624437
MPHJ01000001
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
179415
179339
-
Met
CAT
[ENA]
¡û
>W1711624598
MPHK01000013
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
6258
6334
+
Met
CAT
[ENA]
¡û
>W131214904
ATUO01000054
Gammaproteobacteria
Psychromonas hadalis ATCC BAA-638 [ATUO]
85
161
+
Met
CAT
[ENA]
¡û
>W131221877
AUAV01000007
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
100277
100201
-
Met
CAT
[ENA]
¡û
>W131179497
ARML01000069
Gammaproteobacteria
Psychromonas ossibalaenae ATCC BAA-1528 [ARML]
633
557
-
Met
CAT
[ENA]
¡û
>C016586
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
409220
409144
-
Met
CAT
[Ensembl]
¡û
>C020973
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
3384708
3384784
+
Met
CAT
[Ensembl]
¡û
>C021997
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3597796
3597872
+
Met
CAT
[Ensembl]
¡û
>w028505
ABDD01000003
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [ABDD]
162403
162330
-
Met
CAT
[ENA]
¡û
>w019963
AAUO01000012
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
3652
3728
+
Met
CAT
[ENA]
¡û
>C171033370
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
2909893
2909969
+
Met
CAT
-
¡û
>w007697
AAIU01000040
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
4845
4921
+
Met
CAT
[ENA]
¡û
>WENV181209640
OFBE01018007
[OFBE] metagenome; hydrothermal vent
485
561
+
Ile2
CAT
[ENA]
¢þ
>WENV181322225
OFKP01028197
[OFKP] marine metagenome; sea ice
96
20
-
Ile2
CAT
[ENA]
¢þ
>WENV181322477
OFKR01017878
[OFKR] marine metagenome; sea ice
377
301
-
Ile2
CAT
[ENA]
¢þ
>C08010633
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
1272899
1272826
-
Met
CAT
[Ensembl]
¡û
>W141252222
CBRF010000131
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
10396
10472
+
Met
CAT
[ENA]
¡û
>WENV182556802
OJDH01000112
[OJDH] seawater metagenome; Sea water
35932
35856
-
Ile2
CAT
[ENA]
¢þ
>W141277074
JAEH01000049
Gammaproteobacteria
Shewanella waksmanii ATCC BAA-643 [JAEH]
11234
11310
+
Met
CAT
[ENA]
¡û
>C08010839
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
1485935
1485862
-
Met
CAT
[Ensembl]
¡û
>WENV183055698
OLHF01000096
[OLHF] seawater metagenome; Sea water
16836
16912
+
Ile2
CAT
[ENA]
¢þ
>WENV183616836
OOEE01003550
[OOEE] marine metagenome; sea ice
1333
1409
+
Ile2
CAT
[ENA]
¢þ
>WENV183617054
OOEE01041363
[OOEE] marine metagenome; sea ice
104
28
-
Ile2
CAT
[ENA]
¢þ
>WENV183617453
OOEG01000151
[OOEG] marine metagenome; sea ice
473
397
-
Ile2
CAT
[ENA]
¢þ
>WENV183622609
OOFW01000084
[OOFW] marine metagenome; sea ice
12917
12993
+
Ile2
CAT
[ENA]
¢þ
>WENV183622712
OOFW01002284
[OOFW] marine metagenome; sea ice
872
796
-
Ile2
CAT
[ENA]
¢þ
>WENV183623283
OOFX01055365
[OOFX] marine metagenome; sea ice
344
420
+
Ile2
CAT
[ENA]
¢þ
>WENV183624851
OOGE01020096
[OOGE] marine metagenome; sea ice
452
376
-
Ile2
CAT
[ENA]
¢þ
>WENV170646561
JQIA01000043
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
19429
19504
+
Met
CAT
[ENA]
¢þ
>W09103098
AAIV01000006
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
120845
120769
-
Met
CAT
[ENA]
¡û
>W09105791
AAQS01000003
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
265797
265721
-
Met
CAT
[ENA]
¡û
>W1910676717
MCTV01000006
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
4806
4730
-
Met
CAT
[ENA]
¡û
>W1910677510
MCUF01000087
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
118068
118144
+
Met
CAT
[ENA]
¡û
>C09109862
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
1114277
1114201
-
Met
CAT
[Ensembl]
¡û
>W1911710121
QPQU01000008
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
126737
126661
-
Met
CAT
[ENA]
¡û
>W1810154495
PIZM01000005
Gammaproteobacteria
Psychromonas sp. psych-6C06 [PIZM]
21008
20932
-
Met
CAT
[ENA]
¡û
>W1810155298
PJAP01000453
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
2109
2185
+
Met
CAT
[ENA]
¡û
>W1810155423
PJAR01000040
Gammaproteobacteria
Glaciecola sp. 33A [PJAR]
118790
118714
-
Met
CAT
[ENA]
¡û
>W1810157823
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
165234
165158
-
Met
CAT
[ENA]
¡û
>W1810157866
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4368341
4368265
-
Met
CAT
[ENA]
¡û
>W1810724817
QOCB01000030
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
315
239
-
Met
CAT
[ENA]
¡û
>W1510064913
CDBJ01000065
Gammaproteobacteria
Aeromonas rivuli DSM 22539 [CDBJ]
40426
40502
+
Met
CAT
[ENA]
¡û
>W1610685444
LKTL01000010
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
34944
35020
+
Met
CAT
[ENA]
¡û
>W1611032813
LZFV01000013
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
128824
128748
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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