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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195088 (61 seq.)
>W1710880960
LMSS01000001
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
404289
404365
+
Val
CAC
[ENA]
¡û
>W1710881037
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
2547125
2547049
-
Val
CAC
[ENA]
¡û
>W1710996458
LQBL01000007
Actinomycetota
Serinicoccus chungangensis [LQBL]
9363
9287
-
Val
CAC
[ENA]
¡û
>W1711312330
MAST01000053
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
105746
105822
+
Val
CAC
[ENA]
¡û
>C171034691
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
501557
501481
-
Val
CAC
-
¡û
>W131217031
ATWJ01000009
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
15480
15406
-
Val
CAC
[ENA]
¡û
>W131227555
AUFG01000004
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
172301
172377
+
Val
CAC
[ENA]
¡û
>WENV180096956
MTBK01157523
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
771
845
+
Val
CAC
[ENA]
¡û
>WENV180284393
OBID01037716
[OBID] metagenome; sludge
633
559
-
Val
CAC
[ENA]
¡û
>WENV181188755
OEOE01344067
[OEOE] activated sludge metagenome; Activated Sludge
96
171
+
Val
CAC
[ENA]
¡û
>WENV181376182
OFQZ01021461
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
42
116
+
Val
CAC
[ENA]
¡û
>W141142504
AWQS01000229
Actinomycetota
Intrasporangium chromatireducens Q5-1 [AWQS]
5941
6018
+
Val
CAC
[ENA]
¡û
>W141143069
AWSA01000019
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
23361
23437
+
Val
CAC
[ENA]
¡û
>W141242981
CAJB01000002
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
23179
23255
+
Val
CAC
[ENA]
¡û
>WENV183749101
PPFU01119573
[PPFU] hypolithon metagenome; Antarctic Hypolithon
146
72
-
Val
CAC
[ENA]
¡û
>WENV170010022
APMI01006904
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4352
4428
+
Val
CAC
[ENA]
¡û
>WENV170552023
CXWJ01035107
[CXWJ] wastewater metagenome; activated sludge
1912
1836
-
Val
CAC
[ENA]
¡û
>WENV170552174
CXWJ01042778
[CXWJ] wastewater metagenome; activated sludge
2
76
+
Val
CAC
[ENA]
¡û
>WENV170553656
CXWK01026400
[CXWK] wastewater metagenome; activated sludge
2474
2400
-
Val
CAC
[ENA]
¡û
>WENV170662359
JXWW01046210
[JXWW] soil metagenome; rice field; organic GM Plot
134
58
-
Val
CAC
[ENA]
¡û
>WENV170979650
MTKZ01101122
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2043
2117
+
Val
CAC
[ENA]
¡û
>C181196309
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
1867378
1867302
-
Val
CAC
-
¡û
>C181197186
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
721680
721605
-
Val
CAC
-
¡û
>C191150905
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2103004
2103079
+
Val
CAC
-
¡û
>C191183666
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1552212
1552286
+
Val
CAC
-
¡û
>C151077119
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3138745
3138819
+
Val
CAC
-
¡û
>C151090460
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2529367
2529443
+
Val
CAC
-
¡û
>W2010593060
JABEPQ010000001
Actinomycetota
Knoellia sp. DB2414S [JABEPQ]
716544
716468
-
Val
CAC
[ENA]
¡û
>W2010669072
JACCAB010000001
Actinomycetota
Phycicoccus badiiscoriae DSM 23987 [JACCAB]
3283336
3283260
-
Val
CAC
[ENA]
¡û
>W2011529240
SAYU02000014
Actinomycetota
Phycicoccus sp. CMS6Z-2 [SAYU]
23399
23323
-
Val
CAC
[ENA]
¡û
>W2011552776
SDVA01000005
Actinomycetota
Serinicoccus sp. GP-T3-3 [SDVA]
41372
41447
+
Val
CAC
[ENA]
¡û
>W2011616562
SKBS01000009
Actinomycetota
Serinicoccus sp. HY008 [SKBS]
210921
210846
-
Val
CAC
[ENA]
¡û
>W2012017537
VFMN01000001
Actinomycetota
Lapillicoccus jejuensis DSM 18607 [VFMN]
3887198
3887123
-
Val
CAC
[ENA]
¡û
>W2012018096
VFMW01000001
Actinomycetota
Phycicoccus sp. SLBN-51 [VFMW]
2564178
2564255
+
Val
CAC
[ENA]
¡û
>W2012019915
VFOC01000001
Actinomycetota
Terrabacter sp. SLBN-196 [VFOC]
3494032
3494108
+
Val
CAC
[ENA]
¡û
>W2012020380
VFOK01000001
Actinomycetota
Barrientosiimonas humi DSM 24617 [VFOK]
1414323
1414247
-
Val
CAC
[ENA]
¡û
>W2012020649
VFOQ01000001
Actinomycetota
Oryzihumus leptocrescens DSM 18082 [VFOQ]
1882931
1882855
-
Val
CAC
[ENA]
¡û
>W2012022131
VFPU01000001
Actinomycetota
Ornithinimicrobium humiphilum DSM 12362 [VFPU]
1687527
1687603
+
Val
CAC
[ENA]
¡û
>W2012022295
VFPX01000004
Actinomycetota
Terrabacter sp. 3264 [VFPX]
63876
63952
+
Val
CAC
[ENA]
¡û
>W2012022540
VFQB01000004
Actinomycetota
Terrabacter lapilli 3265 [VFQB]
384580
384504
-
Val
CAC
[ENA]
¡û
>W2012093504
VMSB01000001
Actinomycetota
Ornithinibacter aureus DSM 23364 [VMSB]
693210
693134
-
Val
CAC
[ENA]
¡û
>W2012103390
VOHR01000025
Actinomycetota
Ornithinicoccus sp. YJ01 [VOHR]
8507
8583
+
Val
CAC
[ENA]
¡û
>W2012338043
WIQH01000009
Actinomycetota
Ornithinicoccus hortensis HKI0125 [WIQH]
43337
43415
+
Val
CAC
[ENA]
¡û
>W2012338096
WIQI01000023
Actinomycetota
Ornithinicoccus halotolerans EGI 80423 [WIQI]
20294
20219
-
Val
CAC
[ENA]
¡û
>W2110029864
BMLB01000003
Actinomycetota
Ornithinimicrobium pekingense CGMCC 1.5362 [BMLB]
681077
681151
+
Val
CAC
[ENA]
¡û
>W2110123895
CAJTBP010000001
Actinomycetota
Barrientosiimonas humi type strain: 39 [CAJTBP]
1917287
1917211
-
Val
CAC
[ENA]
¡û
>W2110268892
JACVCU010000005
Actinomycetota
Terrabacter sp. MAHUQ-38 [JACVCU]
389991
389916
-
Val
CAC
[ENA]
¡û
>W2110481355
JAFDVD010000006
Actinomycetota
Phycicoccus sp. MQZ13P-5 [JAFDVD]
74166
74090
-
Val
CAC
[ENA]
¡û
>W2110569775
JAGSNF010000003
Actinomycetota
Phycicoccus sp. BSK3Z-2 [JAGSNF]
372771
372697
-
Val
CAC
[ENA]
¡û
>C241069672
CP042862
Actinomycetota
Serinicoccus profundi CGMCC 4.5582 [CP042862]
1577360
1577434
+
Val
CAC
-
¡û
>C241089181
CP044427
Actinomycetota
Ornithinimicrobium pratense W204 [CP044427]
1615058
1615135
+
Val
CAC
-
¡û
>C241105772
CP046121
Actinomycetota
Nostocoides sp. HKS02 [CP046121]
1122534
1122458
-
Val
CAC
-
¡û
>W1511568130
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
1658834
1658758
-
Val
CAC
[ENA]
¡û
>W11155933
AFAQ01000968
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
274
198
-
Val
CAC
[ENA]
¡û
>W11177044
AFYF01000099
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
21151
21225
+
Val
CAC
[ENA]
¡û
>W1610062572
BCNQ01000015
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2011
1935
-
Val
CAC
[ENA]
¡û
>W1610743306
LMSS01000001
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
404289
404365
+
Val
CAC
[ENA]
¡û
>W1610743383
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
2547125
2547049
-
Val
CAC
[ENA]
¡û
>W1610851115
LQBL01000007
Actinomycetota
Serinicoccus chungangensis [LQBL]
9363
9287
-
Val
CAC
[ENA]
¡û
>W1710060048
BCNQ01000015
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2011
1935
-
Val
CAC
[ENA]
¡û
>W1710552745
FOHB01000002
Actinomycetota
Pedococcus cremeus [FOHB]
409522
409599
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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