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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199470 (70 seq.)
>W1711463019
MJIH01000001
Bacillota
Peptoniphilus porci grossensis [MJIH]
771511
771435
-
Asp
GTC
[ENA]
¡û
>W1711463035
MJIH01000001
Bacillota
Peptoniphilus porci grossensis [MJIH]
593282
593206
-
Asp
GTC
[ENA]
¡û
>W131227353
AUFC01000001
Bacillota
Anaerovorax odorimutans DSM 5092 [AUFC]
175032
175108
+
Asp
GTC
[ENA]
¡û
>W131177617
ARKX01000019
Bacillota
Peptoniphilus lacrimalis DSM 7455 [ARKX]
190018
189942
-
Asp
GTC
[ENA]
¡û
>W131177630
ARKX01000020
Bacillota
Peptoniphilus lacrimalis DSM 7455 [ARKX]
23610
23534
-
Asp
GTC
[ENA]
¡û
>WENV180119166
OASD01015275
[OASD] human gut metagenome; ENVO:feces
166
90
-
Asp
GTC
[ENA]
¡û
>WENV180172473
OAVX01003903
[OAVX] human gut metagenome; faeces
550
626
+
Asp
GTC
[ENA]
¡û
>WENV180193773
OAZW01007697
[OAZW] human gut metagenome; faeces
532
608
+
Asp
GTC
[ENA]
¡û
>WENV180403667
OBRT01004918
[OBRT] human gut metagenome; ENVO:feces
515
439
-
Asp
GTC
[ENA]
¡û
>WENV180405665
OBTM01063398
[OBTM] human gut metagenome; ENVO:feces
107
31
-
Asp
GTC
[ENA]
¡û
>WENV180440867
OBWV01004284
[OBWV] human gut metagenome; faeces
999
1075
+
Asp
GTC
[ENA]
¡û
>WENV180598055
OCPL01156365
[OCPL] human gut metagenome; ENVO:feces
174
98
-
Asp
GTC
[ENA]
¡û
>WENV180639284
OCRJ01000163
[OCRJ] human gut metagenome; human gut
646
722
+
Asp
GTC
[ENA]
¡û
>WENV180712618
ODFT01009044
[ODFT] human metagenome; G_DNA_Posterior fornix
448
524
+
Asp
GTC
[ENA]
¡û
>WENV180769943
ODIG01249931
[ODIG] human metagenome; G_DNA_Tongue dorsum
140
64
-
Asp
GTC
[ENA]
¡û
>WENV180769960
ODIG01264630
[ODIG] human metagenome; G_DNA_Tongue dorsum
140
64
-
Asp
GTC
[ENA]
¡û
>WENV180770028
ODIG01307510
[ODIG] human metagenome; G_DNA_Tongue dorsum
2
78
+
Asp
GTC
[ENA]
¡û
>WENV180966981
ODUS01001438
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
179
255
+
Asp
GTC
[ENA]
¡û
>WENV181000335
ODVU01007051
[ODVU] human metagenome; G_DNA_Anterior nares
112
188
+
Asp
GTC
[ENA]
¡û
>WENV181007051
ODWC01010405
[ODWC] human metagenome; G_DNA_L_Retroauricular crease
374
298
-
Asp
GTC
[ENA]
¡û
>W141147542
AWXB01000005
Bacillota
Peptoniphilus sp. BV3C26 [AWXB]
87796
87720
-
Asp
GTC
[ENA]
¡û
>W141147550
AWXB01000006
Bacillota
Peptoniphilus sp. BV3C26 [AWXB]
24826
24750
-
Asp
GTC
[ENA]
¡û
>WENV181609421
OGLN01030271
[OGLN] metagenome; Human gut stool
94
18
-
Asp
GTC
[ENA]
¡û
>WENV182405860
OIEW01012725
[OIEW] human gut metagenome; fecal sample from infant N3_177 DOL 11
287
363
+
Asp
GTC
[ENA]
¡û
>WENV182672092
OJNM01279568
[OJNM] metagenome; surface
378
302
-
Asp
GTC
[ENA]
¡û
>WENV182961128
OKWK01000192
[OKWK] human gut metagenome; stool
818
894
+
Asp
GTC
[ENA]
¡û
>WENV183705245
PDWI01001267
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
38228
38152
-
Asp
GTC
[ENA]
¡û
>WENV183707759
PDWI01010491
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
7071
6995
-
Asp
GTC
[ENA]
¡û
>WENV183722522
PDWJ01135997
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
390
314
-
Asp
GTC
[ENA]
¡û
>WENV170561571
CZCA01014260
[CZCA] anaerobic digester metagenome; anaerobic digester
726
802
+
Asp
GTC
[ENA]
¡û
>WENV170562702
CZCB01004783
[CZCB] anaerobic digester metagenome; anaerobic digester
6562
6638
+
Asp
GTC
[ENA]
¡û
>WENV170683779
LFRM01003277
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
28593
28669
+
Asp
GTC
[ENA]
¡û
>WENV170687543
LFRM01198556
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
717
793
+
Asp
GTC
[ENA]
¡û
>C191213943
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
458041
458117
+
Asp
GTC
-
¡û
>C191213973
LR134523
Bacillota
Peptoniphilus ivorii NCTC13079 [LR134523]
956740
956664
-
Asp
GTC
-
¡û
>W1910229073
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
116646
116722
+
Asp
GTC
[ENA]
¡û
>W1911498323
OCTQ01000001
Bacillota
Miniphocibacter massiliensis Marseille-P4678 [OCTQ]
498259
498183
-
Asp
GTC
[ENA]
¡û
>W1911541768
OPYI01000001
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
173
249
+
Asp
GTC
[ENA]
¡û
>W1911541801
OPYI01000029
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
51
127
+
Asp
GTC
[ENA]
¡û
>C151102846
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
545717
545793
+
Asp
GTC
[Ensembl]
¡û
>C151102868
LM997412
Bacillota
Peptoniphilus sp. ING2-D1G [LM997412]
886719
886643
-
Asp
GTC
[Ensembl]
¡û
>W2010161535
CABDWR010000001
Bacillota
Peptoniphilus catoniae P8546 [CABDWR]
604
680
+
Asp
GTC
[ENA]
¡û
>W2010161547
CABDWR010000001
Bacillota
Peptoniphilus catoniae P8546 [CABDWR]
483947
483871
-
Asp
GTC
[ENA]
¡û
>W2010252479
CABIZN020000001
Bacillota
Firmicutes bacterium [CABIZN]
182225
182301
+
Asp
GTC
[ENA]
¡û
>W2010252521
CABIZN020000017
Bacillota
Firmicutes bacterium [CABIZN]
747
671
-
Asp
GTC
[ENA]
¡û
>W2010253566
CABJAE020000005
Bacillota
Peptoniphilaceae bacterium [CABJAE]
784
860
+
Asp
GTC
[ENA]
¡û
>W2010253580
CABJAE020000008
Bacillota
Peptoniphilaceae bacterium [CABJAE]
107353
107277
-
Asp
GTC
[ENA]
¡û
>W2010383049
FNWE01000001
Bacillota
Ileibacterium massiliense Marseille-P3115 [FNWE]
116646
116722
+
Asp
GTC
[ENA]
¡û
>W2011159227
OCTQ01000001
Bacillota
Miniphocibacter massiliensis Marseille-P4678 [OCTQ]
498259
498183
-
Asp
GTC
[ENA]
¡û
>W2011170637
OPYI01000001
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
173
249
+
Asp
GTC
[ENA]
¡û
>W2011170670
OPYI01000029
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
51
127
+
Asp
GTC
[ENA]
¡û
>C211231315
CP066744
Bacillota
Clostridiales bacterium AMB_PP1 [CP066744]
1841068
1841144
+
Asp
GTC
-
¡û
>W10111570
ADDO01000021
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
216
292
+
Asp
GTC
[ENA]
¡û
>W10111584
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
396
472
+
Asp
GTC
[ENA]
¡û
>C241130145
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2600738
2600662
-
Asp
GTC
-
¡û
>C241130151
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2485239
2485163
-
Asp
GTC
-
¡û
>C241130165
CP048649
Bacillota
Aminipila butyrica DSM 103574 [CP048649]
2483695
2483619
-
Asp
GTC
-
¡û
>W10123476
AEAA01000074
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
6453
6377
-
Asp
GTC
[ENA]
¡û
>W10123488
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
395
471
+
Asp
GTC
[ENA]
¡û
>W11114497
ADDO01000021
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
216
292
+
Asp
GTC
[ENA]
¡û
>W11114511
ADDO01000045
Bacillota
Peptoniphilus lacrimalis 315-B [ADDO]
396
472
+
Asp
GTC
[ENA]
¡û
>W1511351639
JRNL01000073
Bacillota
Peptoniphilus lacrimalis DNF00528 [JRNL]
212
288
+
Asp
GTC
[ENA]
¡û
>W1511351649
JRNL01000074
Bacillota
Peptoniphilus lacrimalis DNF00528 [JRNL]
212
288
+
Asp
GTC
[ENA]
¡û
>W11130274
AEAA01000074
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
6453
6377
-
Asp
GTC
[ENA]
¡û
>W11130286
AEAA01000112
Bacillota
Peptoniphilus sp. oral taxon 836 oral taxon 836 str. F0141 [AEAA]
395
471
+
Asp
GTC
[ENA]
¡û
>W1610506371
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845436
1845360
-
Asp
GTC
[ENA]
¡û
>W1610506388
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
185725
185649
-
Asp
GTC
[ENA]
¡û
>W1710498874
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
1845436
1845360
-
Asp
GTC
[ENA]
¡û
>W1710498891
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
185725
185649
-
Asp
GTC
[ENA]
¡û
>W1710605170
FWWR01000009
Bacillota
Peptoniphilus asaccharolyticus DSM 20463 [FWWR]
934652
934576
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK