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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.206828 (88 seq.)
>C08000255
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1854194
1854270
+
Met
CAT
[Ensembl]
¡û
>WENV183709307
PDWI01026805
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4644
4720
+
Met
CAT
[ENA]
¡û
>WENV183715224
PDWI01228410
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16
92
+
Met
CAT
[ENA]
¡û
>WENV183715637
PDWI01252148
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1040
1116
+
Met
CAT
[ENA]
¡û
>WENV183718678
PDWJ01005819
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9889
9813
-
Met
CAT
[ENA]
¡û
>WENV183721028
PDWJ01052698
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1467
1543
+
Met
CAT
[ENA]
¡û
>WENV170012764
ASRO01000188
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
230
154
-
Met
CAT
[ENA]
¡û
>WENV170012826
ASRP01000089
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9914
9990
+
Met
CAT
[ENA]
¡û
>WENV170012948
ASRQ01000148
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20664
20740
+
Met
CAT
[ENA]
¡û
>WENV170013051
ASRR01001025
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
220
144
-
Met
CAT
[ENA]
¡û
>WENV170014443
AYRG01000129
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
20664
20740
+
Met
CAT
[ENA]
¡û
>WENV170635572
JDSG01000118
[JDSG] bioreactor metagenome; continuous culture bioreactor short generation time transfer1; day 52 after inoculation
21258
21334
+
Met
CAT
[ENA]
¡û
>WENV170704299
LLEJ01002203
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
296
220
-
Met
CAT
[ENA]
¡û
>WENV170780892
MAAB01027867
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
861
937
+
Met
CAT
[ENA]
¡û
>C181225252
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1854187
1854263
+
Met
CAT
-
¡û
>C191084603
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2109823
2109747
-
Met
CAT
-
¡û
>C191147194
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
1835929
1835853
-
Met
CAT
-
¡û
>C191178272
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1813324
1813400
+
Met
CAT
-
¡û
>W1910810887
MUXE01000024
Campylobacterota
Arcobacter sp. RW17-10 [MUXE]
20773
20849
+
Met
CAT
[ENA]
¡û
>W1910810920
MUXF01000014
Campylobacterota
Arcobacter sp. RW43-9 [MUXF]
61795
61871
+
Met
CAT
[ENA]
¡û
>W1911200237
NREO01000021
Campylobacterota
Arcobacter suis CECT7833 [NREO]
2389
2313
-
Met
CAT
[ENA]
¡û
>W1911200294
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29137
29213
+
Met
CAT
[ENA]
¡û
>W1911426351
NXIG01000021
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
20213
20289
+
Met
CAT
[ENA]
¡û
>W1911426376
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44495
44571
+
Met
CAT
[ENA]
¡û
>W1911426449
NXII01000031
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
2196
2272
+
Met
CAT
[ENA]
¡û
>W1911426483
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
19454
19378
-
Met
CAT
[ENA]
¡û
>W1911576254
PDJW01000060
Campylobacterota
Arcobacter mytili T234 [PDJW]
3541
3465
-
Met
CAT
[ENA]
¡û
>W1911576807
PDKJ01000017
Campylobacterota
Arcobacter ebronensis CECT 8993 [PDKJ]
20236
20160
-
Met
CAT
[ENA]
¡û
>W1911576853
PDKK01000018
Campylobacterota
Arcobacter ebronensis CECT 8441 [PDKK]
9802
9726
-
Met
CAT
[ENA]
¡û
>W1911576976
PDKN01000008
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
18666
18742
+
Met
CAT
[ENA]
¡û
>W1911576989
PDKO01000001
Campylobacterota
Arcobacter anaerophilus DSM 24636 [PDKO]
488388
488312
-
Met
CAT
[ENA]
¡û
>W1911746049
QVQX01000009
Campylobacterota
Arcobacter butzleri 17-1168 [QVQX]
62002
62078
+
Met
CAT
[ENA]
¡û
>W1911775372
QXNB01000014
Campylobacterota
Arcobacter butzleri 6V [QXNB]
18299
18375
+
Met
CAT
[ENA]
¡û
>W2010282409
CABMIP010000062
Campylobacterota
Arcobacter butzleri [CABMIP]
6082
6006
-
Ile2
CAT
[ENA]
¡û
>W2010305821
CABVQV010000008
Campylobacterota
Arcobacter butzleri [CABVQV]
51303
51227
-
Ile2
CAT
[ENA]
¡û
>W2010305895
CABVQW010000022
Campylobacterota
Arcobacter butzleri [CABVQW]
17735
17811
+
Ile2
CAT
[ENA]
¡û
>W2010305939
CABVQX010000013
Campylobacterota
Arcobacter butzleri [CABVQX]
20970
20894
-
Ile2
CAT
[ENA]
¡û
>W2010305972
CABVQY010000021
Campylobacterota
Arcobacter butzleri [CABVQY]
15519
15595
+
Ile2
CAT
[ENA]
¡û
>W2010306072
CABVRA010000016
Campylobacterota
Arcobacter butzleri [CABVRA]
1554
1478
-
Ile2
CAT
[ENA]
¡û
>W2010306103
CABVRB010000010
Campylobacterota
Arcobacter butzleri [CABVRB]
3085
3009
-
Ile2
CAT
[ENA]
¡û
>W2010306205
CABVRD010000017
Campylobacterota
Arcobacter butzleri [CABVRD]
22191
22115
-
Ile2
CAT
[ENA]
¡û
>W2010306243
CABVRE010000024
Campylobacterota
Arcobacter butzleri [CABVRE]
4093
4017
-
Ile2
CAT
[ENA]
¡û
>W2010306332
CABVRG010000010
Campylobacterota
Arcobacter butzleri [CABVRG]
16207
16283
+
Ile2
CAT
[ENA]
¡û
>W2010306382
CABVRI010000013
Campylobacterota
Arcobacter butzleri [CABVRI]
36021
36097
+
Ile2
CAT
[ENA]
¡û
>W2010306426
CABVRJ010000011
Campylobacterota
Arcobacter butzleri [CABVRJ]
61891
61967
+
Ile2
CAT
[ENA]
¡û
>W2010306530
CABVRL010000042
Campylobacterota
Arcobacter butzleri [CABVRL]
6098
6022
-
Ile2
CAT
[ENA]
¡û
>W2010306604
CABVRN010000007
Campylobacterota
Arcobacter butzleri [CABVRN]
55486
55410
-
Ile2
CAT
[ENA]
¡û
>W2010306667
CABVRU010000065
Campylobacterota
Arcobacter butzleri [CABVRU]
5174
5098
-
Ile2
CAT
[ENA]
¡û
>W2010306700
CABVRY010000012
Campylobacterota
Arcobacter butzleri [CABVRY]
61760
61836
+
Ile2
CAT
[ENA]
¡û
>W2010306816
CABVSS010000041
Campylobacterota
Arcobacter butzleri [CABVSS]
13701
13777
+
Ile2
CAT
[ENA]
¡û
>W2010641427
JABWGL010000009
Campylobacterota
Arcobacter butzleri RMIII [JABWGL]
11437
11361
-
Ile2
CAT
[ENA]
¡û
>W2010641473
JABWGM010000008
Campylobacterota
Arcobacter butzleri RMI [JABWGM]
22745
22669
-
Ile2
CAT
[ENA]
¡û
>W2010915818
MUXE01000024
Campylobacterota
Arcobacter sp. RW17-10 [MUXE]
20773
20849
+
Ile2
CAT
[ENA]
¡û
>W2010915851
MUXF01000014
Campylobacterota
Arcobacter sp. RW43-9 [MUXF]
61795
61871
+
Ile2
CAT
[ENA]
¡û
>W2011048453
NREO01000021
Campylobacterota
Arcobacter suis CECT7833 [NREO]
2389
2313
-
Ile2
CAT
[ENA]
¡û
>W2011048510
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29137
29213
+
Ile2
CAT
[ENA]
¡û
>W2011145209
NXIG01000021
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
20213
20289
+
Ile2
CAT
[ENA]
¡û
>W2011145234
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44495
44571
+
Ile2
CAT
[ENA]
¡û
>W2011145307
NXII01000031
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
2196
2272
+
Ile2
CAT
[ENA]
¡û
>W2011145341
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
19454
19378
-
Ile2
CAT
[ENA]
¡û
>W2011186068
PDJW01000060
Campylobacterota
Arcobacter mytili T234 [PDJW]
3541
3465
-
Ile2
CAT
[ENA]
¡û
>W2011186621
PDKJ01000017
Campylobacterota
Arcobacter ebronensis CECT 8993 [PDKJ]
20236
20160
-
Ile2
CAT
[ENA]
¡û
>W2011186667
PDKK01000018
Campylobacterota
Arcobacter ebronensis CECT 8441 [PDKK]
9802
9726
-
Ile2
CAT
[ENA]
¡û
>W2011186790
PDKN01000008
Campylobacterota
Arcobacter sp. CECT 8987 [PDKN]
18666
18742
+
Ile2
CAT
[ENA]
¡û
>W2011186803
PDKO01000001
Campylobacterota
Arcobacter anaerophilus DSM 24636 [PDKO]
488388
488312
-
Ile2
CAT
[ENA]
¡û
>W2011309355
QVQX01000009
Campylobacterota
Arcobacter butzleri 17-1168 [QVQX]
62002
62078
+
Ile2
CAT
[ENA]
¡û
>W2011328970
QXNB01000014
Campylobacterota
Arcobacter butzleri 6V [QXNB]
18299
18375
+
Ile2
CAT
[ENA]
¡û
>W2011403998
RCWF01000006
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
182295
182371
+
Ile2
CAT
[ENA]
¡û
>W2011961979
VANU01000004
Campylobacterota
Arcobacter sp. CAU 1517 [VANU]
365355
365279
-
Ile2
CAT
[ENA]
¡û
>W2012241251
WCIY01000012
Campylobacterota
Arcobacter butzleri 16CS0821-2 [WCIY]
38449
38525
+
Ile2
CAT
[ENA]
¡û
>W2110021098
BMEF01000020
Campylobacterota
Arcobacter pacificus CGMCC 1.11011 [BMEF]
30615
30691
+
Met
CAT
[ENA]
¡û
>W2110037135
BMQR01000011
Campylobacterota
Arcobacter butzleri JCM 31724 [BMQR]
60186
60110
-
Met
CAT
[ENA]
¡û
>C201096484
CP041386
Campylobacterota
Arcobacter butzleri ED-1 [CP041386]
1682828
1682904
+
Ile2
CAT
-
¡û
>W2110762165
QYZU01000012
Campylobacterota
Aliarcobacter butzleri 34_O [QYZU]
64521
64597
+
Met
CAT
[ENA]
¡û
>C231490396
CP104378
Campylobacterota
Aliarcobacter butzleri P1100 [CP104378]
1809634
1809710
+
Met
CAT
-
¡û
>C241068398
CP042652
Campylobacterota
Arcobacter acticola KCTC 52212 [CP042652]
2381608
2381532
-
Ile2
CAT
-
¡û
>C241161600
CP053836
Campylobacterota
Halarcobacter ebronensis LMG 27922 [CP053836]
2188301
2188225
-
Ile2
CAT
-
¡û
>C11100376
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1737745
1737821
+
Met
CAT
[Ensembl]
¡û
>C11101066
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2385308
2385232
-
Met
CAT
[Ensembl]
¡û
>W1510762843
JAIQ01000111
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
14178
14254
+
Met
CAT
[ENA]
¡û
>W1510762880
JAIR01000059
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
14725
14801
+
Met
CAT
[ENA]
¡û
>W1510762911
JAIS01000080
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
10713
10637
-
Met
CAT
[ENA]
¡û
>W1510762966
JAIU01000034
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
14809
14885
+
Met
CAT
[ENA]
¡û
>W1510762994
JAIV01000067
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
14732
14808
+
Met
CAT
[ENA]
¡û
>W1510763042
JAIW01000070
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
15168
15244
+
Met
CAT
[ENA]
¡û
>W1510763067
JAIX01000074
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
10713
10637
-
Met
CAT
[ENA]
¡û
>W11143292
AEPT01000028
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
13719
13795
+
Met
CAT
[ENA]
¡û
>W11167761
AFNL01000023
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
48814
48890
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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