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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.21738 (108 seq.)
>W1711710491
MSZN01000005
Betaproteobacteria
Alcaligenes faecalis [MSZN]
131078
130988
-
Ser
GGA
[ENA]
¡û
>W1711710589
MSZP01000002
Betaproteobacteria
Alcaligenes faecalis [MSZP]
662685
662775
+
Ser
GGA
[ENA]
¡û
>W1711710731
MSZR01000029
Betaproteobacteria
Alcaligenes faecalis [MSZR]
25790
25880
+
Ser
GGA
[ENA]
¡û
>W1711711905
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
234801
234711
-
Ser
GGA
[ENA]
¡û
>C171115521
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3318475
3318385
-
Ser
GGA
-
¡û
>W131051777
AMXV01000034
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
94614
94704
+
Ser
GGA
[ENA]
¡û
>W131223071
AUBT01000012
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
11468
11378
-
Ser
GGA
[ENA]
¡û
>W141104449
AVOG02000069
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
42628
42538
-
Ser
GGA
[ENA]
¡û
>W141139303
AWNL01000040
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
45080
45170
+
Ser
GGA
[ENA]
¡û
>W141237733
BBJQ01000007
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
86111
86021
-
Ser
GGA
[ENA]
¡û
>WENV183728088
PJTP01030907
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
117
207
+
Ser
GGA
[ENA]
¡û
>WENV183733524
PJTY01003501
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1773
1863
+
Ser
GGA
[ENA]
¡û
>WENV183741245
PJUF01064998
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
364
454
+
Ser
GGA
[ENA]
¡û
>WENV183746334
POVV01030046
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
449
359
-
Ser
GGA
[ENA]
¡û
>WENV170136682
CENV01060853
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
39400
39490
+
Ser
GGA
[ENA]
¡û
>WENV170200950
CEPP01018623
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
941
851
-
Ser
GGA
[ENA]
¡û
>WENV170655116
JTFN01005683
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1485
1395
-
Ser
GGA
[ENA]
¡û
>WENV170655644
JTFN01054307
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2289
2199
-
Ser
GGA
[ENA]
¡û
>WENV170656195
JTFO01003719
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
92
2
-
Ser
GGA
[ENA]
¡û
>WENV170656271
JTFO01007814
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
2097
2187
+
Ser
GGA
[ENA]
¡û
>WENV170656663
JTFO01031331
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
11
101
+
Ser
GGA
[ENA]
¡û
>WENV170657410
JTFO01143755
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
11
101
+
Ser
GGA
[ENA]
¡û
>WENV170683847
LFRM01007932
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1141
1051
-
Ser
GGA
[ENA]
¡û
>WENV170705975
LNAP01000742
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
24356
24266
-
Ser
GGA
[ENA]
¡û
>WENV170706507
LNAP01003733
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3075
2985
-
Ser
GGA
[ENA]
¡û
>WENV170707300
LNAP01016818
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4953
4863
-
Ser
GGA
[ENA]
¡û
>WENV170707625
LNAP01027770
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
97
7
-
Ser
GGA
[ENA]
¡û
>WENV170708107
LNAP01050505
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2
92
+
Ser
GGA
[ENA]
¡û
>WENV170708163
LNAP01054479
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1362
1452
+
Ser
GGA
[ENA]
¡û
>C181053240
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3368329
3368239
-
Ser
GGA
-
¡û
>C181088598
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3055623
3055533
-
Ser
GGA
-
¡û
>C191012239
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3890986
3890896
-
Ser
GGA
-
¡û
>C191091178
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1848702
1848612
-
Ser
GGA
-
¡û
>C191113983
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
257395
257305
-
Ser
GGA
-
¡û
>C191149664
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1163958
1163868
-
Ser
GGA
-
¡û
>W1911178569
NQMK01000007
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
46792
46702
-
Ser
GGA
[ENA]
¡û
>W1810062087
PDNV01000003
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
103974
104064
+
Ser
GGA
[ENA]
¡û
>W1810062132
PDNW01000005
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
168587
168497
-
Ser
GGA
[ENA]
¡û
>W1810583906
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
82736
82646
-
Ser
GGA
[ENA]
¡û
>W2010523908
JAANPV010000002
Betaproteobacteria
Paenalcaligenes suwonensis 191B [JAANPV]
154328
154238
-
Ser
GGA
[ENA]
¡û
>W2010587999
JABBMS010000007
Betaproteobacteria
Bordetella trematum ZL0001 [JABBMS]
131743
131653
-
Ser
GGA
[ENA]
¡û
>W2010592167
JABEMF010000002
Betaproteobacteria
Bordetella trematum ATCC 700309 [JABEMF]
169486
169576
+
Ser
GGA
[ENA]
¡û
>W2010673740
JACCEO010000012
Betaproteobacteria
Alcaligenaceae bacterium CGII-43 [JACCEO]
501
411
-
Ser
GGA
[ENA]
¡û
>W2010673774
JACCEP010000009
Betaproteobacteria
Alcaligenaceae bacterium CGII-56 [JACCEP]
169755
169845
+
Ser
GGA
[ENA]
¡û
>W2010673860
JACCER010000016
Betaproteobacteria
Alcaligenaceae bacterium CGII-64 [JACCER]
35850
35760
-
Ser
GGA
[ENA]
¡û
>W2010673925
JACCET010000002
Betaproteobacteria
Alcaligenaceae bacterium CAII-52 [JACCET]
283916
284006
+
Ser
GGA
[ENA]
¡û
>W2010673989
JACCEU010000005
Betaproteobacteria
Eoetvoesia caeni PB3-7B [JACCEU]
111467
111377
-
Ser
GGA
[ENA]
¡û
>W2010743141
JACJUU010000012
Betaproteobacteria
Pusillimonas sp. 7-48 [JACJUU]
70612
70702
+
Ser
GGA
[ENA]
¡û
>W2011033740
NQMK01000007
Betaproteobacteria
Pusillimonas sp. NJUB218 [NQMK]
46792
46702
-
Ser
GGA
[ENA]
¡û
>W2011353813
RAPG01000005
Betaproteobacteria
Pusillimonas ginsengisoli SBSA [RAPG]
277080
277170
+
Ser
GGA
[ENA]
¡û
>W2011355801
RAQX01000002
Betaproteobacteria
Alcaligenes faecalis LK36 [RAQX]
87644
87554
-
Ser
GGA
[ENA]
¡û
>W2011428740
RHXK01000001
Betaproteobacteria
Alcaligenes faecalis AF_174 [RHXK]
618738
618828
+
Ser
GGA
[ENA]
¡û
>W2011505474
RYDV01000009
Betaproteobacteria
Candidimonas sp. SYP-B2681 [RYDV]
51363
51453
+
Ser
GGA
[ENA]
¡û
>W2011549973
SDQD01000001
Betaproteobacteria
Pusillimonas harenae JCM 16917 [SDQD]
1356592
1356682
+
Ser
GGA
[ENA]
¡û
>W2011627361
SMAJ01000001
Betaproteobacteria
Paralcaligenes ureilyticus DSM 24591 [SMAJ]
179941
179851
-
Ser
GGA
[ENA]
¡û
>W2011634547
SMGM01000001
Betaproteobacteria
Pusillimonas sp. YR330 [SMGM]
729461
729551
+
Ser
GGA
[ENA]
¡û
>W2011681055
SRSN01000061
Betaproteobacteria
Alcaligenaceae bacterium 429 [SRSN]
1175
1085
-
Ser
GGA
[ENA]
¡û
>W2011758701
UAQO01000001
Betaproteobacteria
Bordetella trematum NCTC13203 [UAQO]
749228
749318
+
Ser
GGA
[ENA]
¡û
>W2011817211
UFUJ01000001
Betaproteobacteria
Bordetella trematum NCTC12995 [UFUJ]
549167
549257
+
Ser
GGA
[ENA]
¡û
>W2012099705
VOAY01000005
Betaproteobacteria
Pusillimonas sp. ANT_WB101 [VOAY]
13651
13561
-
Ser
GGA
[ENA]
¡û
>SRA1052423
SRR035098.199560
454 Sequencing (SRP001819)
228
318
+
Ser
GGA
[SRA]
>SRA1053023
SRR035098.320684
454 Sequencing (SRP001819)
26
116
+
Ser
GGA
[SRA]
>W2012470972
WWER01000006
Betaproteobacteria
Pusillimonas sp. TS35 [WWER]
289296
289386
+
Ser
GGA
[ENA]
¡û
>W2110050549
BMZN01000003
Betaproteobacteria
Alcaligenes pakistanensis KCTC 42083 [BMZN]
163910
163820
-
Ser
GGA
[ENA]
¡û
>W2110403485
JADZNW010000012
Betaproteobacteria
Alcaligenes faecalis A21 [JADZNW]
10222
10132
-
Ser
GGA
[ENA]
¡û
>W2110514175
JAFMOE010000001
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis HZ01 [JAFMOE]
636062
636152
+
Ser
GGA
[ENA]
¡û
>W2110558858
JAGKLK010000016
Betaproteobacteria
Alcaligenes faecalis 2021EL-00128 [JAGKLK]
9153
9063
-
Ser
GGA
[ENA]
¡û
>W2110610426
JAHKKC010000004
Betaproteobacteria
Alcaligenes sp. 13f [JAHKKC]
176625
176535
-
Ser
GGA
[ENA]
¡û
>W2110661391
JAHXRI010000006
Betaproteobacteria
Alcaligenaceae bacterium LF4-65 [JAHXRI]
818859
818949
+
Ser
GGA
[ENA]
¡û
>C211032254
CP023256
Betaproteobacteria
Alcaligenes faecalis c16 [CP023256]
917139
917229
+
Ser
GGA
-
¡û
>C211071180
CP047670
Betaproteobacteria
Alcaligenes faecalis SCSIO B001 [CP047670]
3399651
3399561
-
Ser
GGA
-
¡û
>C211079381
CP049362
Betaproteobacteria
Alcaligenes sp. HO-1 [CP049362]
3110241
3110151
-
Ser
GGA
-
¡û
>C211221325
CP066058
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_1024 [CP066058]
1681419
1681509
+
Ser
GGA
-
¡û
>C211362391
CP078017
Betaproteobacteria
Alcaligenes aquatilis 393 [CP078017]
3567656
3567566
-
Ser
GGA
-
¡û
>C231125813
CP071957
Betaproteobacteria
Alcaligenes faecalis JLAF9 [CP071957]
3346370
3346280
-
Ser
GGA
-
¡û
>C231265721
CP089848
Betaproteobacteria
Paralcaligenes sp. KSB-10 [CP089848]
2579347
2579257
-
Ser
GGA
-
¡û
>C231313602
CP092182
Betaproteobacteria
Alcaligenes faecalis T17 [CP092182]
3483228
3483138
-
Ser
GGA
-
¡û
>C231346205
CP094619
Betaproteobacteria
Alcaligenes aquatilis AS1 [CP094619]
3142218
3142128
-
Ser
GGA
-
¡û
>C231364914
CP095873
Betaproteobacteria
Alcaligenes faecalis D334 [CP095873]
719689
719779
+
Ser
GGA
-
¡û
>C231375292
CP096916
Betaproteobacteria
Alcaligenes faecalis NY11312 [CP096916]
3779915
3779825
-
Ser
GGA
-
¡û
>C231383356
CP097341
Betaproteobacteria
Alcaligenes faecalis DY-8 [CP097341]
3485673
3485583
-
Ser
GGA
-
¡û
>C231401250
CP098408
Betaproteobacteria
Alcaligenes sp. DN25 [CP098408]
3399859
3399769
-
Ser
GGA
-
¡û
>C231431656
CP100755
Betaproteobacteria
Alcaligenes sp. NLF5-7 [CP100755]
2453053
2453143
+
Ser
GGA
-
¡û
>W2110768197
SHCX01000005
Betaproteobacteria
Alcaligenes faecalis APW500_S1 [SHCX]
70075
69985
-
Ser
GGA
[ENA]
¡û
>W2110769336
SRIU01000003
Betaproteobacteria
Alcaligenes faecalis GPAT318_S1 [SRIU]
637157
637247
+
Ser
GGA
[ENA]
¡û
>W2110769392
SRIV01000003
Betaproteobacteria
Alcaligenes faecalis GMW315_S2 [SRIV]
637157
637247
+
Ser
GGA
[ENA]
¡û
>W2110769437
SRIW01000006
Betaproteobacteria
Alcaligenes faecalis GFE221_S2 [SRIW]
238447
238537
+
Ser
GGA
[ENA]
¡û
>W2110770859
UYIW01000003
Betaproteobacteria
Bordetella trematum NCTC13366 [UYIW]
131428
131338
-
Ser
GGA
[ENA]
¡û
>C241127443
CP048039
Betaproteobacteria
Alcaligenes faecalis MUB14 [CP048039]
3598996
3598906
-
Ser
GGA
-
¡û
>C241139976
CP049957
Betaproteobacteria
Bordetella trematum E202 [CP049957]
3715997
3715907
-
Ser
GGA
-
¡û
>C241390501
OY288190
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis ATCC8750 [OY288190]
3338436
3338346
-
Ser
GGA
-
¡û
>W1511310840
JPQP01000019
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
258963
259053
+
Ser
GGA
[ENA]
¡û
>W1511321017
JQCV01000003
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
415716
415806
+
Ser
GGA
[ENA]
¡û
>C11118203
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
3745450
3745540
+
Ser
GGA
[Ensembl]
¡û
>W1511537439
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
631582
631672
+
Ser
GGA
[ENA]
¡û
>C161051355
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3094807
3094897
+
Ser
GGA
[Ensembl]
¡û
>C161109104
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
722194
722104
-
Ser
GGA
[Ensembl]
¡û
>W121091203
AKMR01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
37871
37781
-
Ser
GGA
[ENA]
¡û
>W1610093581
CYTB01000010
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
69536
69626
+
Ser
GGA
[ENA]
¡û
>W1610447550
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
169444
169534
+
Ser
GGA
[ENA]
¡û
>W1610447628
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
170812
170902
+
Ser
GGA
[ENA]
¡û
>W1610506779
FLRC01000004
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
45178
45268
+
Ser
GGA
[ENA]
¡û
>W1610921517
LSUO01000012
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
43207
43117
-
Ser
GGA
[ENA]
¡û
>W1710082546
BDHG01000008
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
86330
86240
-
Ser
GGA
[ENA]
¡û
>W1710447178
FKBR01000033
Betaproteobacteria
Bordetella trematum [FKBR]
169444
169534
+
Ser
GGA
[ENA]
¡û
>W1710447256
FKBT01000014
Betaproteobacteria
Bordetella trematum [FKBT]
170812
170902
+
Ser
GGA
[ENA]
¡û
>W1710499000
FLRC01000004
Betaproteobacteria
Orrella dioscoreae LMG 29303 [FLRC]
45178
45268
+
Ser
GGA
[ENA]
¡û
>W1710586403
FQXE01000003
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
561432
561522
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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