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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.225356 (60 seq.)
>W1710873095
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
278188
278112
-
His
GTG
[ENA]
¡û
>W1710874356
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
696414
696338
-
His
GTG
[ENA]
¡û
>W1710874444
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
113231
113307
+
His
GTG
[ENA]
¡û
>W1710878310
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
293457
293533
+
His
GTG
[ENA]
¡û
>W1711571747
MNAO01000063
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
15650
15574
-
His
GTG
[ENA]
¡û
>W131051739
AMXU01000065
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
754
678
-
His
GTG
[ENA]
¡û
>WENV180284484
OBID01048095
[OBID] metagenome; sludge
854
930
+
His
GTG
[ENA]
¡û
>C08006510
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3117692
3117619
-
His
GTG
[Ensembl]
¡û
>C08006658
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
3127719
3127646
-
His
GTG
[Ensembl]
¡û
>WENV170124766
CENP01007204
[CENP] marine metagenome genome assembly TARA_030_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
172
96
-
His
GTG
[ENA]
¡û
>WENV170393702
CEUB01232762
[CEUB] marine metagenome genome assembly TARA_138_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
335
259
-
His
GTG
[ENA]
¡û
>WENV170402257
CEUE01342135
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
141
65
-
His
GTG
[ENA]
¡û
>WENV170807512
MDSW01099930
[MDSW] marine metagenome; seawater
861
937
+
His
GTG
[ENA]
¡û
>WENV170869435
MDTB01175982
[MDTB] marine metagenome; seawater
14018
14094
+
His
GTG
[ENA]
¡û
>WENV170870923
MDTB01199340
[MDTB] marine metagenome; seawater
658
734
+
His
GTG
[ENA]
¡û
>WENV170872123
MDTB01214527
[MDTB] marine metagenome; seawater
2241
2165
-
His
GTG
[ENA]
¡û
>WENV170872260
MDTB01216156
[MDTB] marine metagenome; seawater
3397
3473
+
His
GTG
[ENA]
¡û
>WENV170974261
MTKY01056230
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4222
4298
+
His
GTG
[ENA]
¡û
>C181227836
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2761801
2761877
+
His
GTG
-
¡û
>W09106845
ABEC01000002
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
190701
190625
-
His
GTG
[ENA]
¡û
>C09107439
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3177403
3177327
-
His
GTG
[Ensembl]
¡û
>C09107526
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3482703
3482627
-
His
GTG
[Ensembl]
¡û
>W1810445049
PZKG01000118
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
10777
10701
-
His
GTG
[ENA]
¡û
>W1810686011
QKZS01000019
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
53327
53251
-
His
GTG
[ENA]
¡û
>SRA1015780
SRR023846.197294
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
115
+
His
GTG
[SRA]
>SRA1015854
SRR023846.230264
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
38
114
+
His
GTG
[SRA]
>SRA1015900
SRR023846.248361
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
115
+
His
GTG
[SRA]
>SRA1016486
SRR023846.526333
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
118
42
-
His
GTG
[SRA]
>W2010100646
BJVP01000011
Alphaproteobacteria
Methylorubrum extorquens NBRC 15911 [BJVP]
174891
174815
-
His
GTG
[ENA]
¡û
>W2010535214
JAAPAY010000030
Alphaproteobacteria
Methylobacterium sp. ISTM1 [JAAPAY]
107108
107184
+
His
GTG
[ENA]
¡û
>W2010712736
JACHOP010000004
Alphaproteobacteria
Methylorubrum rhodinum DSM 2163 [JACHOP]
167738
167662
-
His
GTG
[ENA]
¡û
>W2010740295
JACJIB010000003
Alphaproteobacteria
Methylorubrum thiocyanatum DSM 11490 [JACJIB]
170176
170100
-
His
GTG
[ENA]
¡û
>W2011398140
RCIG01000003
Alphaproteobacteria
Methylobacterium sp. DB1607 [RCIG]
69343
69267
-
His
GTG
[ENA]
¡û
>W2011540745
SCOS01000001
Alphaproteobacteria
Methylobacterium sp. L1A1 [SCOS]
369584
369660
+
His
GTG
[ENA]
¡û
>W2011676675
SRHQ01000011
Alphaproteobacteria
Methylorubrum sp. Q1 [SRHQ]
46661
46585
-
His
GTG
[ENA]
¡û
>W2012311081
WEKV01000010
Alphaproteobacteria
Methylorubrum populi Pinkel [WEKV]
651667
651591
-
His
GTG
[ENA]
¡û
>W2110019143
BMCP01000001
Alphaproteobacteria
Agaricicola taiwanensis CCM 7684 [BMCP]
993378
993302
-
His
GTG
[ENA]
¡û
>W2110429717
JAEMUK010000004
Alphaproteobacteria
Rhodomicrobium udaipurense JA643 [JAEMUK]
89665
89589
-
His
GTG
[ENA]
¡û
>C201079740
CP039546
Alphaproteobacteria
Methylorubrum populi YC-XJ1 [CP039546]
2884888
2884812
-
His
GTG
-
¡û
>C201203463
CP047607
Alphaproteobacteria
Methylobacterium sp. NI91 [CP047607]
2785250
2785174
-
His
GTG
-
¡û
>C231024565
AP025942
Alphaproteobacteria
Methylorubrum sp. GM97 [AP025942]
3016693
3016617
-
His
GTG
-
¡û
>W10112693
ADFF01000005
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
69290
69366
+
His
GTG
[ENA]
¡û
>W2110752799
NKUI01000019
Alphaproteobacteria
Methylorubrum zatmanii LMG 6087 [NKUI]
49592
49668
+
His
GTG
[ENA]
¡û
>C231527986
CP110130
Alphaproteobacteria
Methylorubrum extorquens NBC_00404 [CP110130]
2587789
2587713
-
His
GTG
-
¡û
>C241180474
CP073633
Alphaproteobacteria
Methylorubrum extorquens ATCC 55366 [CP073633]
3350231
3350155
-
His
GTG
-
¡û
>C241261787
CP125860
Alphaproteobacteria
Rhodomicrobium lacus DSM 166 [CP125860]
948276
948200
-
His
GTG
-
¡û
>W2310013562
BPQV01000001
Alphaproteobacteria
Methylobacterium organophilum NBRC 15689 [BPQV]
284205
284281
+
His
GTG
[ENA]
¡û
>W2310013870
BPRC01000001
Alphaproteobacteria
Methylorubrum aminovorans NBRC 15686 [BPRC]
664466
664390
-
His
GTG
[ENA]
¡û
>W2310013929
BPRD01000179
Alphaproteobacteria
Methylorubrum podarium DSM 15083 [BPRD]
2525
2449
-
His
GTG
[ENA]
¡û
>W2310013977
BPRE01000009
Alphaproteobacteria
Methylorubrum suomiense DSM 14458 [BPRE]
1505
1429
-
His
GTG
[ENA]
¡û
>W11115920
ADFF01000005
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [ADFF]
69290
69366
+
His
GTG
[ENA]
¡û
>C11119039
CP002292
Alphaproteobacteria
Rhodomicrobium vannielii ATCC 17100 [CP002292]
994387
994311
-
His
GTG
[Ensembl]
¡û
>C161004986
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
2904977
2904901
-
His
GTG
[Ensembl]
¡û
>W1610043190
BAZP01001404
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
231
307
+
His
GTG
[ENA]
¡û
>W121010660
AGJK01000014
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
39589
39665
+
His
GTG
[ENA]
¡û
>W1610735441
LMMN01000012
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
278188
278112
-
His
GTG
[ENA]
¡û
>W1610736702
LMNN01000022
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
696414
696338
-
His
GTG
[ENA]
¡û
>W1610736790
LMNP01000031
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
113231
113307
+
His
GTG
[ENA]
¡û
>W1610740656
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
293457
293533
+
His
GTG
[ENA]
¡û
>W1710040350
BAZP01001404
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
231
307
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK