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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.232894 (50 seq.)
>W1711769461
MVEC01000009
Bacteroidota
Spirosoma sp. 209 [MVEC]
121676
121750
+
His
GTG
[ENA]
¡û
>W131169933
ARFD01000029
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
5453
5527
+
His
GTG
[ENA]
¡û
>W131181681
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
2264427
2264351
-
His
GTG
[ENA]
¡û
>W131225333
AUDM01000004
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
94949
94874
-
His
GTG
[ENA]
¡û
>W141093457
AVBI01000019
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
577090
577014
-
His
GTG
[ENA]
¡û
>W141094566
AVCS01000002
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
83679
83753
+
His
GTG
[ENA]
¡û
>W141096676
AVFO01000027
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
75151
75225
+
His
GTG
[ENA]
¡û
>W141097127
AVGG01000007
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
253128
253054
-
His
GTG
[ENA]
¡û
>WENV181843911
OGVV01000536
[OGVV] freshwater metagenome; freshwater
3447
3372
-
His
GTG
[ENA]
¡û
>WENV183745714
POVV01000417
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
28328
28253
-
His
GTG
[ENA]
¡û
>ENV08001309
ABMW01023723
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
107
33
-
His
GTG
[ENA]
¡û
>WENV170246730
CEQP01306080
[CEQP] marine metagenome genome assembly TARA_076_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
597
521
-
His
GTG
[ENA]
¡û
>W141702904
JMLU01000025
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
17098
17172
+
His
GTG
[ENA]
¡û
>W141776843
JOMI01000003
Bacteroidota
Prevotella sp. 10(H) [JOMI]
608305
608231
-
His
GTG
[ENA]
¡û
>W1910578001
JUIX01000010
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
2790
2865
+
His
GTG
[ENA]
¡û
>W1910578002
JUIX01000010
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
2905
2980
+
His
GTG
[ENA]
¡û
>SRA1001431
SRR001064.273985
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
107
33
-
His
GTG
[SRA]
>W1810364372
PVTE01000006
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
173454
173379
-
His
GTG
[ENA]
¡û
>SRA1015565
SRR023846.113527
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
87
163
+
His
GTG
[SRA]
>W2010490161
JAAJBV010000005
Bacteroidota
Flavobacterium sp. TWA-26 [JAAJBV]
183580
183655
+
His
GTG
[ENA]
¡û
>W2010686947
JACFYW010000008
Bacteroidota
Flavobacterium sp. xlx-221 [JACFYW]
161235
161310
+
His
GTG
[ENA]
¡û
>W2010762238
JUIX01000010
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
2790
2865
+
His
GTG
[ENA]
¡û
>W2010762239
JUIX01000010
Bacteroidota
Flavobacterium sp. TCH3-2 [JUIX]
2905
2980
+
His
GTG
[ENA]
¡û
>W2011170786
OPYL01000003
Bacteroidota
Dysgonomonas sp. Marseille-P4361 [OPYL]
277012
276937
-
His
GTG
[ENA]
¡û
>W2011480249
RQTJ01000008
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
2687
2762
+
His
GTG
[ENA]
¡û
>W2011480250
RQTJ01000008
Bacteroidota
Flavobacterium sp. YIM 102796 [RQTJ]
2802
2877
+
His
GTG
[ENA]
¡û
>W2011481083
RQVQ01000004
Bacteroidota
Flavobacterium sp. YIM 102701-2 [RQVQ]
49284
49359
+
His
GTG
[ENA]
¡û
>W2011481084
RQVQ01000004
Bacteroidota
Flavobacterium sp. YIM 102701-2 [RQVQ]
49400
49475
+
His
GTG
[ENA]
¡û
>W2011532769
SBLB01000007
Bacteroidota
Spirosoma sp. TY50 [SBLB]
269298
269223
-
His
GTG
[ENA]
¡û
>W2011980737
VDCZ01000014
Bacteroidota
Flavobacterium sp. TP390 [VDCZ]
67067
66992
-
His
GTG
[ENA]
¡û
>W2012081532
VLKM01000004
Bacteroidota
Flavobacterium cheniae CGMCC 1.6844 [VLKM]
26035
25960
-
His
GTG
[ENA]
¡û
>W2012332529
WIBI01000004
Bacteroidota
Flavobacterium sp. LMO9 [WIBI]
125824
125749
-
His
GTG
[ENA]
¡û
>W2012412184
WPIN01000007
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
30256
30331
+
His
GTG
[ENA]
¡û
>W2012424962
WQLW01000014
Bacteroidota
Flavobacterium sp. TP390 [WQLW]
67067
66992
-
His
GTG
[ENA]
¡û
>W1510019948
BBXL01000001
Bacteroidota
Dysgonomonas macrotermitis JCM 19375 [BBXL]
578045
577971
-
His
GTG
[ENA]
¡û
>C231263227
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
248334
248257
-
His
GTG
-
¡û
>C231273577
CP090376
Bacteroidota
Flavobacterium enshiense R6S-5-6 [CP090376]
1919533
1919608
+
His
GTG
-
¡û
>W2110772279
VFIA01000010
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
109046
109123
+
His
GTG
[ENA]
¡û
>C241140704
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
749914
749839
-
His
GTG
-
¡û
>C241156309
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
5347871
5347946
+
His
GTG
-
¡û
>C241171857
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
1000796
1000721
-
His
GTG
-
¡û
>W1610534982
JRLU01000004
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
140555
140631
+
His
GTG
[ENA]
¡û
>W1610535165
JRLZ01000003
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
428700
428626
-
His
GTG
[ENA]
¡û
>W1710558202
FOLQ01000009
Bacteroidota
Spirosoma endophyticum [FOLQ]
207529
207455
-
His
GTG
[ENA]
¡û
>W1710570757
FOVI01000032
Bacteroidota
Paenimyroides ummariense [FOVI]
15567
15642
+
His
GTG
[ENA]
¡û
>W1710570758
FOVI01000032
Bacteroidota
Paenimyroides ummariense [FOVI]
15682
15756
+
His
GTG
[ENA]
¡û
>W1710582566
FQUC01000001
Bacteroidota
Dysgonomonas macrotermitis [FQUC]
578140
578066
-
His
GTG
[ENA]
¡û
>W1710588392
FQZH01000006
Bacteroidota
Flavobacterium haoranii [FQZH]
33099
33023
-
His
GTG
[ENA]
¡û
>W1710637218
JRLU01000004
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
140555
140631
+
His
GTG
[ENA]
¡û
>W133004709
AUFL01000005
Bacteroidota
Dysgonomonas capnocytophagoides DSM 22835 [AUFL]
313718
313792
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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